Engelsk

Sample ID, analyte type, body site where sample was obtained, histological type of sample, inflammation status, tumor status of sample, paucities disease activity index, sequence center, and visit of participants with or without ulcerative colitis and involved in the "Ulcerative Colitis Human Microbiome Project (UCHMP)" project.

5 Formulär  
pht006262
Beskrivning

pht006262

De-identified sample ID
Beskrivning

SAMPLE_ID

Datatyp

string

Alias
UMLS CUI [1,1]
C1299222
UMLS CUI [1,2]
C2346787
Body site where sample was collected
Beskrivning

BODY_SITE

Datatyp

string

Alias
UMLS CUI [1,1]
C1515974
UMLS CUI [1,2]
C0200345
Analyte type [DNA]
Beskrivning

ANALYTE_TYPE

Datatyp

string

Alias
UMLS CUI [1,1]
C0443354
UMLS CUI [1,2]
C0332307
Inflammation status
Beskrivning

IS_INFLAMED

Datatyp

text

Alias
UMLS CUI [1,1]
C0021368
UMLS CUI [1,2]
C0243095
Cell or tissue type or subtype of sample
Beskrivning

HISTOLOGICAL_TYPE

Datatyp

text

Alias
UMLS CUI [1,1]
C0449475
UMLS CUI [1,2]
C0332307
UMLS CUI [1,3]
C0040300
Pouchitis disease activity index
Beskrivning

PDAI

Datatyp

text

Alias
UMLS CUI [1,1]
C3869583
Name of the center which conducted sequencing [MBL]
Beskrivning

SEQUENCING_CENTER

Datatyp

string

Alias
UMLS CUI [1,1]
C1301943
Patient
Beskrivning

patient

Datatyp

text

Alias
UMLS CUI [1,1]
C1269815
Visit
Beskrivning

visit

Datatyp

text

Alias
UMLS CUI [1,1]
C0545082
Tumor status of samples
Beskrivning

IS_TUMOR

Datatyp

text

Alias
UMLS CUI [1,1]
C0449438
UMLS CUI [1,2]
C0027651
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Similar models

Sample ID, analyte type, body site where sample was obtained, histological type of sample, inflammation status, tumor status of sample, paucities disease activity index, sequence center, and visit of participants with or without ulcerative colitis and involved in the "Ulcerative Colitis Human Microbiome Project (UCHMP)" project.

5 Formulär
Name
Typ
Description | Question | Decode (Coded Value)
Datatyp
Alias
Item Group
pht006262
SAMPLE_ID
Item
De-identified sample ID
string
C1299222 (UMLS CUI [1,1])
C2346787 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C1515974 (UMLS CUI [1,1])
C0200345 (UMLS CUI [1,2])
ANALYTE_TYPE
Item
Analyte type [DNA]
string
C0443354 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
Item
Inflammation status
text
C0021368 (UMLS CUI [1,1])
C0243095 (UMLS CUI [1,2])
IS_INFLAMED
Code List
Inflammation status
CL Item
No inflammation noted (0)
C1298908 (UMLS CUI [1,1])
C0021368 (UMLS CUI [1,2])
CL Item
Inflammation present (1)
C0021368 (UMLS CUI [1,1])
C0001314 (UMLS CUI [1,2])
CL Item
Post antibiotic treatment (2)
C0205156 (UMLS CUI [1,1])
C0338237 (UMLS CUI [1,2])
Item
Cell or tissue type or subtype of sample
text
C0449475 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
C0040300 (UMLS CUI [1,3])
HISTOLOGICAL_TYPE
Code List
Cell or tissue type or subtype of sample
CL Item
Biopsy (BI)
C0005558 (UMLS CUI [1,1])
CL Item
Brush (BR)
C0009417 (UMLS CUI [1,1])
C0441631 (UMLS CUI [1,2])
CL Item
luminal aspirate (LU)
C0370199 (UMLS CUI [1,1])
Item
Pouchitis disease activity index
text
C3869583 (UMLS CUI [1,1])
PDAI
Code List
Pouchitis disease activity index
CL Item
Not available (9999)
SEQUENCING_CENTER
Item
Name of the center which conducted sequencing [MBL]
string
C1301943 (UMLS CUI [1,1])
patient
Item
Patient
text
C1269815 (UMLS CUI [1,1])
visit
Item
Visit
text
C0545082 (UMLS CUI [1,1])
Item
Tumor status of samples
text
C0449438 (UMLS CUI [1,1])
C0027651 (UMLS CUI [1,2])
IS_TUMOR
Code List
Tumor status of samples
CL Item
Not a tumor (N)
C1298908 (UMLS CUI [1,1])
C0027651 (UMLS CUI [1,2])
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