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The sample attributes data table contains the body site where the sample was collected, analyte type, histological type, analysis category, and sequencing site.

6 Formulaires  
pht002584
Description

pht002584

De-identified Sample ID
Description

SAMPID

Type de données

string

Alias
UMLS CUI [1,1]
C2346787
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Description

BODY_SITE

Type de données

string

Alias
UMLS CUI [1,1]
C1515974
UMLS CUI [1,2]
C0200345
Analyte Type
Description

ANALYTE_TYPE

Type de données

string

Alias
UMLS CUI [1,1]
C4744818
Tumor status
Description

IS_TUMOR

Type de données

text

Alias
UMLS CUI [1,1]
C0475752
Cell or tissue type or subtype of sample
Description

HISTOLOGICAL_TYPE

Type de données

string

Alias
UMLS CUI [1,1]
C0332307
UMLS CUI [1,2]
C0007634
UMLS CUI [1,3]
C0370003
UMLS CUI [2,1]
C0332307
UMLS CUI [2,2]
C0040300
UMLS CUI [2,3]
C0370003
Analysis Category
Description

ANALYSIS_CAT

Type de données

string

Alias
UMLS CUI [1,1]
C0936012
UMLS CUI [1,2]
C0683312
Site where sequencing occurred
Description

SITE

Type de données

string

Alias
UMLS CUI [1,1]
C2825164
UMLS CUI [1,2]
C1294197
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Similar models

The sample attributes data table contains the body site where the sample was collected, analyte type, histological type, analysis category, and sequencing site.

6 Formulaires
Name
Type
Description | Question | Decode (Coded Value)
Type de données
Alias
Item Group
pht002584
SAMPID
Item
De-identified Sample ID
string
C2346787 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
Item
Body site where sample was collected
string
C1515974 (UMLS CUI [1,1])
C0200345 (UMLS CUI [1,2])
BODY_SITE
Code List
Body site where sample was collected
CL Item
BLOOD (BLOOD)
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
ANALYTE_TYPE
Code List
Analyte Type
CL Item
DNA (DNA)
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
IS_TUMOR
Code List
Tumor status
CL Item
Is not a tumor (N)
CL Item
Is Tumor (Y)
Item
Cell or tissue type or subtype of sample
string
C0332307 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0370003 (UMLS CUI [1,3])
C0332307 (UMLS CUI [2,1])
C0040300 (UMLS CUI [2,2])
C0370003 (UMLS CUI [2,3])
HISTOLOGICAL_TYPE
Code List
Cell or tissue type or subtype of sample
CL Item
BLOOD (BLOOD)
Item
Analysis Category
string
C0936012 (UMLS CUI [1,1])
C0683312 (UMLS CUI [1,2])
ANALYSIS_CAT
Code List
Analysis Category
CL Item
CASE (CASE)
CL Item
CONTROL (CONTROL)
CL Item
PROBAND (PROBAND)
CL Item
PARENT (PARENT)
CL Item
SIBLING (SIBLING)
CL Item
HALF SIBLING (HALF SIBLING)
Item
Site where sequencing occurred
string
C2825164 (UMLS CUI [1,1])
C1294197 (UMLS CUI [1,2])
SITE
Code List
Site where sequencing occurred
CL Item
BAYLOR (BAYLOR)
CL Item
BROAD (BROAD)
CL Item
MSSM (MSSM)
CL Item
VU (VU)
CL Item
UPENN (UPENN)
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