SAMPID
Item
De-identified Sample ID
string
C2346787 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
CL Item
Is not a tumor (N)
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
sample_type
Item
How tissue sample was collected
string
C0025663 (UMLS CUI [1,1])
C0200345 (UMLS CUI [1,2])
HISTOLOGICAL_TYPE
Item
Cell or tissue type or subtype of sample
string
C2713035 (UMLS CUI [1,1])
BRAF_mutation_type
Item
Somatic mutation in TP53 (Entrez GeneID: 673)?
string
C3897380 (UMLS CUI [1,1])
KRAS_mutation_type
Item
Somatic mutation in KRAS (Entrez GeneID: 3845)?
string
C2747837 (UMLS CUI [1,1])
Item
Somatic mutation in TP53 (Entrez GeneID: 7157)?
text
C3897380 (UMLS CUI [1,1])
Code List
Somatic mutation in TP53 (Entrez GeneID: 7157)?
CL Item
Not assessed (NA)
Item
Describes the type of procedure performed to collect pathology sample.
text
C0200345 (UMLS CUI [1,1])
C0444061 (UMLS CUI [1,2])
Code List
Describes the type of procedure performed to collect pathology sample.
CL Item
Core needle biopsy (CNB)
CL Item
Fine needle biopsy (FNA)
CL Item
Incisional biopsy (IB)
CL Item
Surgical resection (RESECT)
Item
Indicates whether more than one tumour is present.
text
C0260037 (UMLS CUI [1,1])
Code List
Indicates whether more than one tumour is present.
CL Item
Not Applicable (N/A)
Tumour Size (cm)
Item
Indicates the greatest dimension of the largest tumour in centimetres (cm)
float
C4763432 (UMLS CUI [1,1])
Item
Indicates the level/grade of differentiation
text
C1511938 (UMLS CUI [1,1])
Code List
Indicates the level/grade of differentiation
CL Item
Grade I (Well differentiated) (I)
CL Item
Grade II (Moderately differentiated) (II)
CL Item
Grade III (Poorly differentiated) (III)
CL Item
Grade IV (Undifferentiated) (IV)
CL Item
Not Applicable (N/A)
CL Item
Grade X (Unknown) (X)
Item
Indicates whether lymphatic invasion is documented within the tumour.
text
C1708790 (UMLS CUI [1,1])
Code List
Indicates whether lymphatic invasion is documented within the tumour.
CL Item
Not Applicable (N/A)
CL Item
Yes extensive (Y EXT)
CL Item
Yes, minimal (Y MIN)
CL Item
Yes, (not otherwise specified) (Y NOS)
Item
Indicates whether vascular invasion is documented within the tumour.
text
C1318569 (UMLS CUI [1,1])
Code List
Indicates whether vascular invasion is documented within the tumour.
CL Item
Not Applicable (N/A)
Item
Indicates whether perineural invasion is documented within the tumour.
text
C1300724 (UMLS CUI [1,1])
Code List
Indicates whether perineural invasion is documented within the tumour.
CL Item
Not Applicable (N/A)
Item
Indicates the presence of perineal invasion.
text
C1300092 (UMLS CUI [1,1])
C0031066 (UMLS CUI [1,2])
Code List
Indicates the presence of perineal invasion.
CL Item
Not Applicable (N/A)
Item
Indicates the presence of extramural blood vessel invasion
text
C4296384 (UMLS CUI [1,1])
Code List
Indicates the presence of extramural blood vessel invasion
CL Item
Not Applicable (N/A)
Item
Indicates whether extracapsular nodal extension is documented.
text
C1300900 (UMLS CUI [1,1])
Code List
Indicates whether extracapsular nodal extension is documented.
CL Item
Not Applicable (N/A)
Item
Indicates whether the bowel was perforated. Refers to clinical and pathological documented perforation.
text
C0021845 (UMLS CUI [1,1])
Code List
Indicates whether the bowel was perforated. Refers to clinical and pathological documented perforation.
CL Item
Not Applicable (N/A)
Item
Indicates whether peritoneal seeding has been documented
text
C0027645 (UMLS CUI [1,1])
C1704247 (UMLS CUI [1,2])
Code List
Indicates whether peritoneal seeding has been documented
CL Item
Not Applicable (N/A)
Item
Indicates the primary tumour stage determined pathologically at the time of diagnosis and prior to any treatment.
text
C0677930 (UMLS CUI [1,1])
C1300072 (UMLS CUI [1,2])
Code List
Indicates the primary tumour stage determined pathologically at the time of diagnosis and prior to any treatment.
CL Item
Not Applicable (N/A)
Item
Indicates the extent of nodal involvement determined pathologically at the time of diagnosis and prior to any treatment.
text
C0806692 (UMLS CUI [1,1])
Code List
Indicates the extent of nodal involvement determined pathologically at the time of diagnosis and prior to any treatment.
CL Item
Not Applicable (N/A)
Item
Indicates the metastatic stage.
text
C2367419 (UMLS CUI [1,1])
Code List
Indicates the metastatic stage.
CL Item
M0 - No distant metastasis (M0)
CL Item
M1 - Distant metastasis (M1)
CL Item
MX - Distant metastasis cannot be assessed (MX)
CL Item
Not Applicable (N/A)