Subject ID, age, gender, country of subject origin, primary diagnosis, menopausal status, and tumor characteristics including expression subtype of HER 2, ER, and PR, stage, grade, and histology of tumors obtained from participants with breast cancer and involved in the Sequence Analysis of Mutations and Translocations Across Breast Cancer Subtypes " project.

pht002587
Descrição

pht002587

Unique participant Identifier
Descrição

SUBJID

Tipo de dados

string

Alias
UMLS CUI [1,1]
C2348585
Participant's age
Descrição

Age

Tipo de dados

text

Unidades de medida
  • Years
Alias
UMLS CUI [1,1]
C0001779
Years
Participant's gender as male or female [Male, Female]
Descrição

Gender

Tipo de dados

string

Alias
UMLS CUI [1,1]
C0079399
The main disease(s) for which the participant has been asked to donate a sample for study [Breast Cancer]
Descrição

Primary Disease

Tipo de dados

string

Alias
UMLS CUI [1,1]
C0277554
UMLS CUI [1,2]
C0080231
Expression subtype as determined by PAM50 classification [Unknown, Basal, HER2, Luminal A, Luminal B, Normal]
Descrição

Expression Subtype

Tipo de dados

string

Alias
UMLS CUI [1,1]
C0449560
UMLS CUI [1,2]
C4054276
Country where sample was collected [Mexico, Vietnam]
Descrição

Country

Tipo de dados

string

Alias
UMLS CUI [1,1]
C0454664
UMLS CUI [1,2]
C0200345
Evidence of her2 protein expression on immunohistochemistry [Positive, Negative, Unknown]
Descrição

HER 2 Positive

Tipo de dados

string

Alias
UMLS CUI [1,1]
C1512413
Cessation of menses [Perimenopausal, Post Menopausal, Premenopausal, Unknown]
Descrição

Menopausal Status

Tipo de dados

text

Unidades de medida
  • Years
Alias
UMLS CUI [1,1]
C0232969
UMLS CUI [1,2]
C3839366
UMLS CUI [1,3]
C0232970
UMLS CUI [1,4]
C0439673
Years
Pathological stage of breast cancer at diagnosis [I, II, III]
Descrição

Stage

Tipo de dados

string

Alias
UMLS CUI [1,1]
C0678222
UMLS CUI [1,2]
C0027646
Evidence of estrogen receptor expression on immunohistochemistry [Positive, Negative, Unknown]
Descrição

ER Positive

Tipo de dados

string

Alias
UMLS CUI [1,1]
C0034804
Degree of tumor differentiation as determined by pathology [I, II, III]
Descrição

Grade

Tipo de dados

string

Alias
UMLS CUI [1,1]
C0449289
Subtype as determined by pathology [Carcinoma, Ductal In Situ (DCIS), Carcinoma, Mucinous, Infiltrating Ductal Carcinoma, Infiltrating Lobular Carcinoma, Infiltrating Tubular Carcinoma, Medullary Breast Carcinoma, Mixed carcinoma]
Descrição

Histology

Tipo de dados

string

Alias
UMLS CUI [1,1]
C1519691
Evidence of progesterone receptor expression on immunohistochemistry [Positive, Negative, Unknown]
Descrição

PR Positive

Tipo de dados

string

Alias
UMLS CUI [1,1]
C2919590

Similar models

Subject ID, age, gender, country of subject origin, primary diagnosis, menopausal status, and tumor characteristics including expression subtype of HER 2, ER, and PR, stage, grade, and histology of tumors obtained from participants with breast cancer and involved in the Sequence Analysis of Mutations and Translocations Across Breast Cancer Subtypes " project.

Name
Tipo
Description | Question | Decode (Coded Value)
Tipo de dados
Alias
Item Group
pht002587
SUBJID
Item
Unique participant Identifier
string
C2348585 (UMLS CUI [1,1])
Age
Item
Participant's age
text
C0001779 (UMLS CUI [1,1])
Gender
Item
Participant's gender as male or female [Male, Female]
string
C0079399 (UMLS CUI [1,1])
Primary Disease
Item
The main disease(s) for which the participant has been asked to donate a sample for study [Breast Cancer]
string
C0277554 (UMLS CUI [1,1])
C0080231 (UMLS CUI [1,2])
Expression Subtype
Item
Expression subtype as determined by PAM50 classification [Unknown, Basal, HER2, Luminal A, Luminal B, Normal]
string
C0449560 (UMLS CUI [1,1])
C4054276 (UMLS CUI [1,2])
Country
Item
Country where sample was collected [Mexico, Vietnam]
string
C0454664 (UMLS CUI [1,1])
C0200345 (UMLS CUI [1,2])
HER 2 Positive
Item
Evidence of her2 protein expression on immunohistochemistry [Positive, Negative, Unknown]
string
C1512413 (UMLS CUI [1,1])
Menopausal Status
Item
Cessation of menses [Perimenopausal, Post Menopausal, Premenopausal, Unknown]
text
C0232969 (UMLS CUI [1,1])
C3839366 (UMLS CUI [1,2])
C0232970 (UMLS CUI [1,3])
C0439673 (UMLS CUI [1,4])
Stage
Item
Pathological stage of breast cancer at diagnosis [I, II, III]
string
C0678222 (UMLS CUI [1,1])
C0027646 (UMLS CUI [1,2])
ER Positive
Item
Evidence of estrogen receptor expression on immunohistochemistry [Positive, Negative, Unknown]
string
C0034804 (UMLS CUI [1,1])
Grade
Item
Degree of tumor differentiation as determined by pathology [I, II, III]
string
C0449289 (UMLS CUI [1,1])
Histology
Item
Subtype as determined by pathology [Carcinoma, Ductal In Situ (DCIS), Carcinoma, Mucinous, Infiltrating Ductal Carcinoma, Infiltrating Lobular Carcinoma, Infiltrating Tubular Carcinoma, Medullary Breast Carcinoma, Mixed carcinoma]
string
C1519691 (UMLS CUI [1,1])
PR Positive
Item
Evidence of progesterone receptor expression on immunohistochemistry [Positive, Negative, Unknown]
string
C2919590 (UMLS CUI [1,1])