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This data table contains subject IDs and consent group information. The data table also includes a mapping of subject IDs to other subject ID aliases.

6 Formulieren  
  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. This data table contains subject IDs and consent group information. The data table also includes a mapping of subject IDs to other subject ID aliases.
    3. The data table contains a mapping of subject ID to sample ID. Samples are the final preps submitted for sequencing. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes a mapping of sample IDs to other sample ID aliases.
    4. This subject phenotype table includes subjects diagnosed with retinoblastoma. The variables are was the disease sporadic or inherited, age at diagnosis, additional information regarding molecular testing, primary treatment protocol, relapse information, bone marrow transplant status, presence of genetic lesions, tumor purity, type of specimen and site where tissue was extracted. Additionally, there are 2 sociodemography variables: gender and ethnicity.
    5. This sample attributes table includes variables indicating the tumor/normal status, the body site where the sample was extracted, sample analyte type, histological type, primary tumor location, and whether sample was a xenograft. Note: the primary tumor location refers to the subject's primary tumor location and is independent from where the sample was extracted.
    6. This data table contains a mapping of sample ID to NCBI GEO accessions.
pht002284
Beschrijving

pht002284

Subject ID
Beschrijving

SUBJID

Datatype

string

Alias
UMLS CUI [1,1]
C2348585
Consent group as determined by DAC
Beschrijving

CONSENT

Datatype

text

Alias
UMLS CUI [1,1]
C0021430
UMLS CUI [1,2]
C1257890
Source repository where subjects originate
Beschrijving

SUBJ_SOURCE

Datatype

string

Alias
UMLS CUI [1,1]
C0449416
UMLS CUI [1,2]
C3847505
Subject ID used in the Source Repository
Beschrijving

SOURCE_SUBJID

Datatype

string

Alias
UMLS CUI [1,1]
C0449416
UMLS CUI [1,2]
C3847505
UMLS CUI [1,3]
C2348585
Case control status of the subject
Beschrijving

AFFECTION_STATUS

Datatype

text

Alias
UMLS CUI [1,1]
C3274646
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Similar models

This data table contains subject IDs and consent group information. The data table also includes a mapping of subject IDs to other subject ID aliases.

6 Formulieren
  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. This data table contains subject IDs and consent group information. The data table also includes a mapping of subject IDs to other subject ID aliases.
    3. The data table contains a mapping of subject ID to sample ID. Samples are the final preps submitted for sequencing. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes a mapping of sample IDs to other sample ID aliases.
    4. This subject phenotype table includes subjects diagnosed with retinoblastoma. The variables are was the disease sporadic or inherited, age at diagnosis, additional information regarding molecular testing, primary treatment protocol, relapse information, bone marrow transplant status, presence of genetic lesions, tumor purity, type of specimen and site where tissue was extracted. Additionally, there are 2 sociodemography variables: gender and ethnicity.
    5. This sample attributes table includes variables indicating the tumor/normal status, the body site where the sample was extracted, sample analyte type, histological type, primary tumor location, and whether sample was a xenograft. Note: the primary tumor location refers to the subject's primary tumor location and is independent from where the sample was extracted.
    6. This data table contains a mapping of sample ID to NCBI GEO accessions.
Name
Type
Description | Question | Decode (Coded Value)
Datatype
Alias
Item Group
pht002284
SUBJID
Item
Subject ID
string
C2348585 (UMLS CUI [1,1])
Item
Consent group as determined by DAC
text
C0021430 (UMLS CUI [1,1])
C1257890 (UMLS CUI [1,2])
CONSENT
Code List
Consent group as determined by DAC
CL Item
General Research Use (GRU) (1)
SUBJ_SOURCE
Item
Source repository where subjects originate
string
C0449416 (UMLS CUI [1,1])
C3847505 (UMLS CUI [1,2])
SOURCE_SUBJID
Item
Subject ID used in the Source Repository
string
C0449416 (UMLS CUI [1,1])
C3847505 (UMLS CUI [1,2])
C2348585 (UMLS CUI [1,3])
Item
Case control status of the subject
text
C3274646 (UMLS CUI [1,1])
AFFECTION_STATUS
Code List
Case control status of the subject
CL Item
Case (2)
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