Lung cancer cases were included based on a lung cancer diagnosis established on clinical criteria and confirmed by pathology reports from surgery, biopsy, or cytology samples in approximately 95% of cases and on clinical history and imaging for the remaining 5%. Tumor histology was coded according to the International Classification of Diseases for Oncology.
Item
Lung cancer cases were included based on a lung cancer diagnosis established on clinical criteria and confirmed by pathology reports from surgery, biopsy, or cytology samples in approximately 95% of cases and on clinical history and imaging for the remaining 5%. Tumor histology was coded according to the International Classification of Diseases for Oncology.
boolean
C1512693 (UMLS CUI [1,1])
C0242379 (UMLS CUI [1,2])
C0679557 (UMLS CUI [1,3])
C0332140 (UMLS CUI [1,4])
C1512693 (UMLS CUI [2,1])
C0019638 (UMLS CUI [2,2])
C0009219 (UMLS CUI [2,3])
C1512892 (UMLS CUI [2,4])
Of the eligible subjects, in the original analysis, 183 were excluded for issues related to genotyping quality control and 337 subjects were excluded with incomplete phenotype data resulting in a final dataset of 5739 lung cancer cases and 5848 controls. After the further exclusion of 47 individuals because of informed consent issues and 22 individuals for QC reasons, the dataset released in dbGap and caBIG includes 5699 cases and 5818 controls.
Item
Of the eligible subjects, in the original analysis, 183 were excluded for issues related to genotyping quality control and 337 subjects were excluded with incomplete phenotype data resulting in a final dataset of 5739 lung cancer cases and 5848 controls. After the further exclusion of 47 individuals because of informed consent issues and 22 individuals for QC reasons, the dataset released in dbGap and caBIG includes 5699 cases and 5818 controls.
boolean
C0680251 (UMLS CUI [1,1])
C0796344 (UMLS CUI [1,2])
C0332306 (UMLS CUI [1,3])
C0680251 (UMLS CUI [2,1])
C0205257 (UMLS CUI [2,2])
C0031437 (UMLS CUI [2,3])
C1511726 (UMLS CUI [2,4])
C0680251 (UMLS CUI [3,1])
C0021430 (UMLS CUI [3,2])
C0034378 (UMLS CUI [3,3])
The subjects included in the original analysis as reported in Landi et al.,
Item
The subjects included in the original analysis as reported in Landi et al., AJHG 2009, by study: Cases Controls EAGLE 1920 1979 ATBC 1732 1271 PLCO 1390 1924 CSP-II 697 674
boolean
C1512693 (UMLS CUI [1,1])
C2919603 (UMLS CUI [1,2])
C1511726 (UMLS CUI [1,3])
The subjects included in the dataset to be released in dbGaP and caBIG, by study, after further exclusions for informed consent and QC reasons
Item
The subjects included in the dataset to be released in dbGaP and caBIG, by study, after further exclusions for informed consent and QC reasons: Cases Controls EAGLE 1917 1978 ATBC 1732 1270 PLCO 1355 1896 CSP-II 695 674
boolean
C1512693 (UMLS CUI [1,1])
C0150098 (UMLS CUI [1,2])
Further details of genotyping exclusions are provided in Supplemental Table 2 of the AJHG Report (Landi et al.)
Item
Further details of genotyping exclusions are provided in Supplemental Table 2 of the AJHG Report (Landi et al.)
boolean
C0680251 (UMLS CUI [1,1])
C1285573 (UMLS CUI [1,2])