Inglés

This subject phenotype table includes subjects diagnosed with retinoblastoma. The variables are was the disease sporadic or inherited, age at diagnosis, additional information regarding molecular testing, primary treatment protocol, relapse information, bone marrow transplant status, presence of genetic lesions, tumor purity, type of specimen and site where tissue was extracted. Additionally, there are 2 sociodemography variables: gender and ethnicity.

6 formularios  
  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. This data table contains subject IDs and consent group information. The data table also includes a mapping of subject IDs to other subject ID aliases.
    3. The data table contains a mapping of subject ID to sample ID. Samples are the final preps submitted for sequencing. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes a mapping of sample IDs to other sample ID aliases.
    4. This subject phenotype table includes subjects diagnosed with retinoblastoma. The variables are was the disease sporadic or inherited, age at diagnosis, additional information regarding molecular testing, primary treatment protocol, relapse information, bone marrow transplant status, presence of genetic lesions, tumor purity, type of specimen and site where tissue was extracted. Additionally, there are 2 sociodemography variables: gender and ethnicity.
    5. This sample attributes table includes variables indicating the tumor/normal status, the body site where the sample was extracted, sample analyte type, histological type, primary tumor location, and whether sample was a xenograft. Note: the primary tumor location refers to the subject's primary tumor location and is independent from where the sample was extracted.
    6. This data table contains a mapping of sample ID to NCBI GEO accessions.
pht002286
Descripción

pht002286

Deidentified Subject's ID
Descripción

SUBJID

Tipo de datos

text

Alias
UMLS CUI [1,1]
C2346787
UMLS CUI [1,2]
C2348585
Age at Diagnosis (Years)
Descripción

ageAtDxYears

Tipo de datos

integer

Unidades de medida
  • Years
Alias
UMLS CUI [1,1]
C1828181
Years
Additional Info (usually regarding Molecular Testing)
Descripción

additionalInfo

Tipo de datos

string

Alias
UMLS CUI [1,1]
C1524062
UMLS CUI [1,2]
C1533716
Primary Treatment Protocol
Descripción

primaryProtocol

Tipo de datos

text

Alias
UMLS CUI [1,1]
C0205225
UMLS CUI [1,2]
C0040808
Did the patient relapse?
Descripción

relapse

Tipo de datos

text

Alias
UMLS CUI [1,1]
C0035020
Additional Relapse Comments
Descripción

relapseComments

Tipo de datos

string

Alias
UMLS CUI [1,1]
C0035020
UMLS CUI [1,2]
C1546922
Did the patient receive a bone marrow transplant?
Descripción

bmt

Tipo de datos

text

Alias
UMLS CUI [1,1]
C0005961
Genetic Lesions
Descripción

geneticLesions

Tipo de datos

string

Alias
UMLS CUI [1,1]
C0314603
UMLS CUI [1,2]
C0221198
Gender
Descripción

gender

Tipo de datos

text

Alias
UMLS CUI [1,1]
C0079399
Ethnicity
Descripción

ethnicity

Tipo de datos

text

Alias
UMLS CUI [1,1]
C0015031
Vital Status
Descripción

vitalStatus

Tipo de datos

text

Alias
UMLS CUI [1,1]
C1148433
Tumor Purity
Descripción

tumorPurity

Tipo de datos

string

Alias
UMLS CUI [1,1]
C0027651
UMLS CUI [1,2]
C1882508
Disease Code
Descripción

diseaseCode

Tipo de datos

text

Alias
UMLS CUI [1,1]
C0012634
UMLS CUI [1,2]
C0805701
Type of Specimen
Descripción

typeOfSpecimen

Tipo de datos

text

Alias
UMLS CUI [1,1]
C0456204
Tissue Site
Descripción

tissueSite

Tipo de datos

text

Alias
UMLS CUI [1,1]
C3539058
Was disease sporadic or inherited?
Descripción

sporadicOrInherited

Tipo de datos

text

Alias
UMLS CUI [1,1]
C0205422
UMLS CUI [1,2]
C0205224
UMLS CUI [1,3]
C0012634
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Similar models

This subject phenotype table includes subjects diagnosed with retinoblastoma. The variables are was the disease sporadic or inherited, age at diagnosis, additional information regarding molecular testing, primary treatment protocol, relapse information, bone marrow transplant status, presence of genetic lesions, tumor purity, type of specimen and site where tissue was extracted. Additionally, there are 2 sociodemography variables: gender and ethnicity.

6 formularios
  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. This data table contains subject IDs and consent group information. The data table also includes a mapping of subject IDs to other subject ID aliases.
    3. The data table contains a mapping of subject ID to sample ID. Samples are the final preps submitted for sequencing. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes a mapping of sample IDs to other sample ID aliases.
    4. This subject phenotype table includes subjects diagnosed with retinoblastoma. The variables are was the disease sporadic or inherited, age at diagnosis, additional information regarding molecular testing, primary treatment protocol, relapse information, bone marrow transplant status, presence of genetic lesions, tumor purity, type of specimen and site where tissue was extracted. Additionally, there are 2 sociodemography variables: gender and ethnicity.
    5. This sample attributes table includes variables indicating the tumor/normal status, the body site where the sample was extracted, sample analyte type, histological type, primary tumor location, and whether sample was a xenograft. Note: the primary tumor location refers to the subject's primary tumor location and is independent from where the sample was extracted.
    6. This data table contains a mapping of sample ID to NCBI GEO accessions.
Name
Tipo
Description | Question | Decode (Coded Value)
Tipo de datos
Alias
Item Group
pht002286
SUBJID
Item
Deidentified Subject's ID
text
C2346787 (UMLS CUI [1,1])
C2348585 (UMLS CUI [1,2])
ageAtDxYears
Item
Age at Diagnosis (Years)
integer
C1828181 (UMLS CUI [1,1])
additionalInfo
Item
Additional Info (usually regarding Molecular Testing)
string
C1524062 (UMLS CUI [1,1])
C1533716 (UMLS CUI [1,2])
Item
Primary Treatment Protocol
text
C0205225 (UMLS CUI [1,1])
C0040808 (UMLS CUI [1,2])
primaryProtocol
Code List
Primary Treatment Protocol
CL Item
RET5 (RET5)
CL Item
OTHER (OTHER)
CL Item
unspecified (unspecified)
Item
Did the patient relapse?
text
C0035020 (UMLS CUI [1,1])
relapse
Code List
Did the patient relapse?
CL Item
Yes (Y)
CL Item
No (N)
CL Item
unspecified (U)
relapseComments
Item
Additional Relapse Comments
string
C0035020 (UMLS CUI [1,1])
C1546922 (UMLS CUI [1,2])
Item
Did the patient receive a bone marrow transplant?
text
C0005961 (UMLS CUI [1,1])
bmt
Code List
Did the patient receive a bone marrow transplant?
CL Item
Yes (Y)
CL Item
No (N)
geneticLesions
Item
Genetic Lesions
string
C0314603 (UMLS CUI [1,1])
C0221198 (UMLS CUI [1,2])
Item
Gender
text
C0079399 (UMLS CUI [1,1])
gender
Code List
Gender
CL Item
Male (M)
CL Item
Female (F)
Item
Ethnicity
text
C0015031 (UMLS CUI [1,1])
ethnicity
Code List
Ethnicity
CL Item
Caucasian (C)
CL Item
Black (B)
CL Item
Other (O)
Item
Vital Status
text
C1148433 (UMLS CUI [1,1])
vitalStatus
Code List
Vital Status
CL Item
Alive (A)
CL Item
Deceased (D)
CL Item
unspecified (U)
tumorPurity
Item
Tumor Purity
string
C0027651 (UMLS CUI [1,1])
C1882508 (UMLS CUI [1,2])
Item
Disease Code
text
C0012634 (UMLS CUI [1,1])
C0805701 (UMLS CUI [1,2])
diseaseCode
Code List
Disease Code
CL Item
Retinoblastoma (RB)
Item
Type of Specimen
text
C0456204 (UMLS CUI [1,1])
typeOfSpecimen
Code List
Type of Specimen
CL Item
DNA (DNA)
Item
Tissue Site
text
C3539058 (UMLS CUI [1,1])
tissueSite
Code List
Tissue Site
CL Item
Right Eye Tissue (Right Eye Tissue)
CL Item
Left Eye Tissue (Left Eye Tissue)
CL Item
Eye Tissue (Eye Tissue)
Item
Was disease sporadic or inherited?
text
C0205422 (UMLS CUI [1,1])
C0205224 (UMLS CUI [1,2])
C0012634 (UMLS CUI [1,3])
sporadicOrInherited
Code List
Was disease sporadic or inherited?
CL Item
inherited (inherited)
CL Item
sporadic (sporadic)
CL Item
unspecified (unspecified)
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