English

Sample ID, outside hospital diagnosis of tumor, tumor/normal tissue status of samples, body site where from sample was collected, percent of nucleated cells consist of tumor cells, analyte type, and primary tumor location of samples obtained from patients with head and neck cancer.

4 forms  
pht002384
Description

pht002384

De-identified Sample ID
Description

SAMPID

Data type

string

Alias
UMLS CUI [1,1]
C2346787
UMLS CUI [1,2]
C1299222
Outside hospital diagnosis as reported by the collaborator [Squamous Cell Carcinoma]
Description

OSH Diagnosis

Data type

string

Alias
UMLS CUI [1,1]
C0806434
UMLS CUI [1,2]
C0011900
UMLS CUI [1,3]
C0007137
Indicates the tumor/normal status of a sample
Description

Sample Type

Data type

string

Alias
UMLS CUI [1,1]
C5237802
General body site where sample was collected [blood, oral cavity, larynx, oropharynx, tongue, tonsil, nose, thyroid]
Description

Tissue Site

Data type

string

Alias
UMLS CUI [1,1]
C0449705
Estimated percent of nucleated cells that consist of tumor cells (determined by BSP if tissue sample QC'd, but may be provided by collaborator on samples BSP does not review)
Description

Tumor Percent

Data type

text

Measurement units
  • %
Alias
UMLS CUI [1,1]
C5204475
%
Indicates primary or recurrent tumor
Description

Tumor Type

Data type

string

Alias
UMLS CUI [1,1]
C0677930
UMLS CUI [1,2]
C0521158
Molecular analyte [DNA]
Description

ANALYTE_TYPE

Data type

string

Alias
UMLS CUI [1,1]
C4744818
UMLS CUI [1,2]
C0012854
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Similar models

Sample ID, outside hospital diagnosis of tumor, tumor/normal tissue status of samples, body site where from sample was collected, percent of nucleated cells consist of tumor cells, analyte type, and primary tumor location of samples obtained from patients with head and neck cancer.

4 forms
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht002384
SAMPID
Item
De-identified Sample ID
string
C2346787 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
OSH Diagnosis
Item
Outside hospital diagnosis as reported by the collaborator [Squamous Cell Carcinoma]
string
C0806434 (UMLS CUI [1,1])
C0011900 (UMLS CUI [1,2])
C0007137 (UMLS CUI [1,3])
Sample Type
Item
Indicates the tumor/normal status of a sample
string
C5237802 (UMLS CUI [1,1])
Tissue Site
Item
General body site where sample was collected [blood, oral cavity, larynx, oropharynx, tongue, tonsil, nose, thyroid]
string
C0449705 (UMLS CUI [1,1])
Tumor Percent
Item
Estimated percent of nucleated cells that consist of tumor cells (determined by BSP if tissue sample QC'd, but may be provided by collaborator on samples BSP does not review)
text
C5204475 (UMLS CUI [1,1])
Tumor Type
Item
Indicates primary or recurrent tumor
string
C0677930 (UMLS CUI [1,1])
C0521158 (UMLS CUI [1,2])
ANALYTE_TYPE
Item
Molecular analyte [DNA]
string
C4744818 (UMLS CUI [1,1])
C0012854 (UMLS CUI [1,2])
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