Inglês

Sample ID, analyte type , body site where from samples were collected, tumor status, and histological type of samples obtained from participants affected with prostate cancer and involved in the "Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression" project.

4 Formulários  
pht002533
Descrição

pht002533

De-identified sample ID
Descrição

SAMPID

Tipo de dados

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Descrição

HARVEST_SITE

Tipo de dados

string

Alias
UMLS CUI [1,1]
C1515974
UMLS CUI [1,2]
C0200345
Analyte type
Descrição

ANALYTE_TYPE

Tipo de dados

string

Alias
UMLS CUI [1,1]
C4744818
Sample originates from tumor or not
Descrição

IS_TUMOR

Tipo de dados

text

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0475752
Tumor status
Descrição

CANCER_STATUS

Tipo de dados

string

Alias
UMLS CUI [1,1]
C0475752
ETS transcription factor gene fusion status
Descrição

ETS_FUSION_STATUS

Tipo de dados

string

Alias
UMLS CUI [1,1]
C0812200
UMLS CUI [1,2]
C0178648
UMLS CUI [1,3]
C0449438
Illumina Genome Analyzer Flowcell/Lane identifier
Descrição

RUN_ID

Tipo de dados

string

Alias
UMLS CUI [1,1]
C0017428
UMLS CUI [1,2]
C0179038
Type of sequencing
Descrição

FRAGMENT_LAYOUT

Tipo de dados

string

Alias
UMLS CUI [1,1]
C0332307
UMLS CUI [1,2]
C1561491
Length of each sequence read
Descrição

READ_LENGTH

Tipo de dados

text

Alias
UMLS CUI [1,1]
C4723641
UMLS CUI [1,2]
C1444754
Average size of fragment
Descrição

FRAGMENT_SIZE

Tipo de dados

text

Alias
UMLS CUI [1,1]
C1510992
UMLS CUI [1,2]
C0456389
UMLS CUI [1,3]
C1708096
Illumina Base Calling Pipeline Version
Descrição

PIPELINE_VERSION

Tipo de dados

string

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Similar models

Sample ID, analyte type , body site where from samples were collected, tumor status, and histological type of samples obtained from participants affected with prostate cancer and involved in the "Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression" project.

4 Formulários
Name
Tipo
Description | Question | Decode (Coded Value)
Tipo de dados
Alias
Item Group
pht002533
SAMPID
Item
De-identified sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
HARVEST_SITE
Item
Body site where sample was collected
string
C1515974 (UMLS CUI [1,1])
C0200345 (UMLS CUI [1,2])
ANALYTE_TYPE
Item
Analyte type
string
C4744818 (UMLS CUI [1,1])
Item
Sample originates from tumor or not
text
C2347026 (UMLS CUI [1,1])
C0475752 (UMLS CUI [1,2])
IS_TUMOR
Code List
Sample originates from tumor or not
CL Item
Is not a tumor (N)
C1298908 (UMLS CUI [1,1])
C0027651 (UMLS CUI [1,2])
CL Item
Is Tumor (Y)
C0027651 (UMLS CUI [1,1])
CANCER_STATUS
Item
Tumor status
string
C0475752 (UMLS CUI [1,1])
ETS_FUSION_STATUS
Item
ETS transcription factor gene fusion status
string
C0812200 (UMLS CUI [1,1])
C0178648 (UMLS CUI [1,2])
C0449438 (UMLS CUI [1,3])
RUN_ID
Item
Illumina Genome Analyzer Flowcell/Lane identifier
string
C0017428 (UMLS CUI [1,1])
C0179038 (UMLS CUI [1,2])
FRAGMENT_LAYOUT
Item
Type of sequencing
string
C0332307 (UMLS CUI [1,1])
C1561491 (UMLS CUI [1,2])
READ_LENGTH
Item
Length of each sequence read
text
C4723641 (UMLS CUI [1,1])
C1444754 (UMLS CUI [1,2])
FRAGMENT_SIZE
Item
Average size of fragment
text
C1510992 (UMLS CUI [1,1])
C0456389 (UMLS CUI [1,2])
C1708096 (UMLS CUI [1,3])
PIPELINE_VERSION
Item
Illumina Base Calling Pipeline Version
string
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