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Dataset pht006200: This subject sample mapping data table includes a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample aliases and sample use.

4 forms  
  1. StudyEvent: Prematurity and Respiratory Outcome Program
    1. Dataset pht006199: The subject consent data table contains subject IDs, consent group information, and subject aliases.
    2. Dataset pht006200: This subject sample mapping data table includes a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample aliases and sample use.
    3. Dataset pht006201: This subject phenotype data table includes the subject's sex, race, ethnicity, cohort assignment based on full term or pre-term at gestational birth, gestational age, birth weight and mode, day of life and diagnosis of NEC.
    4. Dataset pht006202: This sample attributes table includes body site where sample was collected, analyte type, tumor status, histological type, postmenstrual age at time of rectal swab, and day of life at time of rectal swab, Z score of body weight at rectal swab, microbiome phase, read count, medications taken in the past week (n=6 variables; corticosteroid, motility, proton pump inhibitors, H2 receptor antagonists, diurectics, and antimicrobials), and nutrients consumed in the past week (n=11 variables; protein, lipid, total enteral calories, total calories, total carbohydrates, total lipids, total proteins, enteral calories, enteral carbohydrates, enteral lipids, and enteral proteins).
Data dictionary
Description

Data dictionary

Alias
UMLS CUI [1,1]
C2707520
Subject ID
Description

SUBJECT_ID

Data type

string

Alias
UMLS CUI [1,1]
C2348585
dbGaP ID
phv00282742
Sample ID
Description

SAMPLE_ID

Data type

string

Alias
UMLS CUI [1,1]
C1299222
dbGaP ID
phv00282743.v1.p1
Source repository where samples originate
Description

SAMPLE_SOURCE

Data type

string

Alias
UMLS CUI [1,1]
C0449416
UMLS CUI [1,2]
C0370003
dbGaP ID
phv00282744
Sample ID used in the Source Repository
Description

SOURCE_SAMPLE_ID

Data type

string

Alias
UMLS CUI [1,1]
C1299222
UMLS CUI [1,2]
C0449416
UMLS CUI [1,3]
C0370003
dbGaP ID
phv00282745
Sample Use
Description

SAMPLE_USE

Data type

text

Alias
UMLS CUI [1,1]
C1524063
UMLS CUI [1,2]
C0370003
dbGaP ID
phv00282746
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Similar models

Dataset pht006200: This subject sample mapping data table includes a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample aliases and sample use.

4 forms
  1. StudyEvent: Prematurity and Respiratory Outcome Program
    1. Dataset pht006199: The subject consent data table contains subject IDs, consent group information, and subject aliases.
    2. Dataset pht006200: This subject sample mapping data table includes a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample aliases and sample use.
    3. Dataset pht006201: This subject phenotype data table includes the subject's sex, race, ethnicity, cohort assignment based on full term or pre-term at gestational birth, gestational age, birth weight and mode, day of life and diagnosis of NEC.
    4. Dataset pht006202: This sample attributes table includes body site where sample was collected, analyte type, tumor status, histological type, postmenstrual age at time of rectal swab, and day of life at time of rectal swab, Z score of body weight at rectal swab, microbiome phase, read count, medications taken in the past week (n=6 variables; corticosteroid, motility, proton pump inhibitors, H2 receptor antagonists, diurectics, and antimicrobials), and nutrients consumed in the past week (n=11 variables; protein, lipid, total enteral calories, total calories, total carbohydrates, total lipids, total proteins, enteral calories, enteral carbohydrates, enteral lipids, and enteral proteins).
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
Data dictionary
C2707520 (UMLS CUI [1,1])
SUBJECT_ID
Item
Subject ID
string
C2348585 (UMLS CUI [1,1])
phv00282742 (dbGaP ID)
SAMPLE_ID
Item
Sample ID
string
C1299222 (UMLS CUI [1,1])
phv00282743.v1.p1 (dbGaP ID)
SAMPLE_SOURCE
Item
Source repository where samples originate
string
C0449416 (UMLS CUI [1,1])
C0370003 (UMLS CUI [1,2])
phv00282744 (dbGaP ID)
SOURCE_SAMPLE_ID
Item
Sample ID used in the Source Repository
string
C1299222 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
C0370003 (UMLS CUI [1,3])
phv00282745 (dbGaP ID)
Item
Sample Use
text
C1524063 (UMLS CUI [1,1])
C0370003 (UMLS CUI [1,2])
phv00282746 (dbGaP ID)
CL.2
Code List
Sample Use
CL Item
16S rRNA sequencing (Seq_rRNA_16S)
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