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Dataset pht006199: The subject consent data table contains subject IDs, consent group information, and subject aliases.

4 forms  
  1. StudyEvent: Prematurity and Respiratory Outcome Program
    1. Dataset pht006199: The subject consent data table contains subject IDs, consent group information, and subject aliases.
    2. Dataset pht006200: This subject sample mapping data table includes a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample aliases and sample use.
    3. Dataset pht006201: This subject phenotype data table includes the subject's sex, race, ethnicity, cohort assignment based on full term or pre-term at gestational birth, gestational age, birth weight and mode, day of life and diagnosis of NEC.
    4. Dataset pht006202: This sample attributes table includes body site where sample was collected, analyte type, tumor status, histological type, postmenstrual age at time of rectal swab, and day of life at time of rectal swab, Z score of body weight at rectal swab, microbiome phase, read count, medications taken in the past week (n=6 variables; corticosteroid, motility, proton pump inhibitors, H2 receptor antagonists, diurectics, and antimicrobials), and nutrients consumed in the past week (n=11 variables; protein, lipid, total enteral calories, total calories, total carbohydrates, total lipids, total proteins, enteral calories, enteral carbohydrates, enteral lipids, and enteral proteins).
Data dictionary
Description

Data dictionary

Alias
UMLS CUI [1,1]
C2707520
Subject ID
Description

SUBJECT_ID

Data type

string

Alias
UMLS CUI [1,1]
C2348585
dbGaP ID
phv00282738
Consent group as determined by DAC
Description

CONSENT

Data type

integer

Alias
UMLS CUI [1,1]
C0021430
UMLS CUI [1,2]
C1257890
dbGaP ID
phv00282739
Source repository where subjects originate
Description

SUBJECT_SOURCE

Data type

string

Alias
UMLS CUI [1,1]
C0449416
UMLS CUI [1,2]
C0681850
dbGaP ID
phv00282740
Subject ID used in the Source Repository
Description

SOURCE_SUBJECT_ID

Data type

string

Alias
UMLS CUI [1,1]
C2348585
UMLS CUI [1,2]
C0449416
UMLS CUI [1,3]
C0681850
dbGaP ID
phv00282741
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Similar models

Dataset pht006199: The subject consent data table contains subject IDs, consent group information, and subject aliases.

4 forms
  1. StudyEvent: Prematurity and Respiratory Outcome Program
    1. Dataset pht006199: The subject consent data table contains subject IDs, consent group information, and subject aliases.
    2. Dataset pht006200: This subject sample mapping data table includes a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample aliases and sample use.
    3. Dataset pht006201: This subject phenotype data table includes the subject's sex, race, ethnicity, cohort assignment based on full term or pre-term at gestational birth, gestational age, birth weight and mode, day of life and diagnosis of NEC.
    4. Dataset pht006202: This sample attributes table includes body site where sample was collected, analyte type, tumor status, histological type, postmenstrual age at time of rectal swab, and day of life at time of rectal swab, Z score of body weight at rectal swab, microbiome phase, read count, medications taken in the past week (n=6 variables; corticosteroid, motility, proton pump inhibitors, H2 receptor antagonists, diurectics, and antimicrobials), and nutrients consumed in the past week (n=11 variables; protein, lipid, total enteral calories, total calories, total carbohydrates, total lipids, total proteins, enteral calories, enteral carbohydrates, enteral lipids, and enteral proteins).
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
Data dictionary
C2707520 (UMLS CUI [1,1])
SUBJECT_ID
Item
Subject ID
string
C2348585 (UMLS CUI [1,1])
phv00282738 (dbGaP ID)
Item
Consent group as determined by DAC
integer
C0021430 (UMLS CUI [1,1])
C1257890 (UMLS CUI [1,2])
phv00282739 (dbGaP ID)
CL.1
Code List
Consent group as determined by DAC
CL Item
Health/Medical/Biomedical (IRB, NPU) (HMB-IRB-NPU)  (1)
SUBJECT_SOURCE
Item
Source repository where subjects originate
string
C0449416 (UMLS CUI [1,1])
C0681850 (UMLS CUI [1,2])
phv00282740 (dbGaP ID)
SOURCE_SUBJECT_ID
Item
Subject ID used in the Source Repository
string
C2348585 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
C0681850 (UMLS CUI [1,3])
phv00282741 (dbGaP ID)
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