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Dataset pht006201.v1.p1: This subject phenotype data table includes the subject's sex, race, ethnicity, cohort assignment based on full term or pre-term at gestational birth, gestational age, birth weight and mode, day of life and diagnosis of NEC.

4 forms  
  1. StudyEvent: Prematurity and Respiratory Outcome Program
    1. Dataset pht006199.v1.p1: The subject consent data table contains subject IDs, consent group information, and subject aliases.
    2. Dataset pht006200.v1.p1: This subject sample mapping data table includes a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample aliases and sample use.
    3. Dataset pht006201.v1.p1: This subject phenotype data table includes the subject's sex, race, ethnicity, cohort assignment based on full term or pre-term at gestational birth, gestational age, birth weight and mode, day of life and diagnosis of NEC.
    4. Dataset pht006202.v1.p1: This sample attributes table includes body site where sample was collected, analyte type, tumor status, histological type, postmenstrual age at time of rectal swab, and day of life at time of rectal swab, Z score of body weight at rectal swab, microbiome phase, read count, medications taken in the past week (n=6 variables; corticosteroid, motility, proton pump inhibitors, H2 receptor antagonists, diurectics, and antimicrobials), and nutrients consumed in the past week (n=11 variables; protein, lipid, total enteral calories, total calories, total carbohydrates, total lipids, total proteins, enteral calories, enteral carbohydrates, enteral lipids, and enteral proteins).
Data dictionary
Description

Data dictionary

Alias
UMLS CUI [1,1]
C2707520
Unique Identifier
Description

SUBJECT_ID

Data type

string

Alias
UMLS CUI [1,1]
C2348585
dbGaP ID
phv00282747.v1.p1
Cohort assignment FullTerm and PreTerm based upon gestational age at birth
Description

Cohort

Data type

string

Alias
UMLS CUI [1,1]
C0599755
dbGaP ID
phv00282748.v1.p1
Gestational Age at Birth
Description

GestationalAge

Data type

float

Measurement units
  • weeks
Alias
UMLS CUI [1,1]
C0456129
dbGaP ID
phv00282749.v1.p1
weeks
Birth Weight
Description

BirthWeight

Data type

float

Measurement units
  • kg
Alias
UMLS CUI [1,1]
C0005612
dbGaP ID
phv00282750.v1.p1
kg
Subject sex
Description

Sex

Data type

string

Alias
UMLS CUI [1,1]
C0079399
dbGaP ID
phv00282751.v1.p1
Race
Description

Race

Data type

string

Alias
UMLS CUI [1,1]
C0034510
dbGaP ID
phv00282752.v1.p1
Ethnicity
Description

Ethnicity

Data type

string

Alias
UMLS CUI [1,1]
C0015031
dbGaP ID
phv00282753.v1.p1
Mode of Delivery
Description

BirthMode

Data type

string

Alias
UMLS CUI [1,1]
C1555567
dbGaP ID
phv00282754.v1.p1
Confirmed diagnosis of necrotizing enterocolitis
Description

Babies_with_NEC_Dx

Data type

string

Alias
UMLS CUI [1,1]
C1442826
UMLS CUI [1,2]
C1547321
dbGaP ID
phv00282755.v1.p1
Day of life at Diagnosis of necrotizing enterocolitis
Description

NEC_Dx_DOL

Data type

integer

Alias
UMLS CUI [1,1]
C1828181
UMLS CUI [1,2]
C1442826
UMLS CUI [1,3]
C0443281
UMLS CUI [1,4]
C0439228
dbGaP ID
phv00282756.v1.p1
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Similar models

Dataset pht006201.v1.p1: This subject phenotype data table includes the subject's sex, race, ethnicity, cohort assignment based on full term or pre-term at gestational birth, gestational age, birth weight and mode, day of life and diagnosis of NEC.

4 forms
  1. StudyEvent: Prematurity and Respiratory Outcome Program
    1. Dataset pht006199.v1.p1: The subject consent data table contains subject IDs, consent group information, and subject aliases.
    2. Dataset pht006200.v1.p1: This subject sample mapping data table includes a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample aliases and sample use.
    3. Dataset pht006201.v1.p1: This subject phenotype data table includes the subject's sex, race, ethnicity, cohort assignment based on full term or pre-term at gestational birth, gestational age, birth weight and mode, day of life and diagnosis of NEC.
    4. Dataset pht006202.v1.p1: This sample attributes table includes body site where sample was collected, analyte type, tumor status, histological type, postmenstrual age at time of rectal swab, and day of life at time of rectal swab, Z score of body weight at rectal swab, microbiome phase, read count, medications taken in the past week (n=6 variables; corticosteroid, motility, proton pump inhibitors, H2 receptor antagonists, diurectics, and antimicrobials), and nutrients consumed in the past week (n=11 variables; protein, lipid, total enteral calories, total calories, total carbohydrates, total lipids, total proteins, enteral calories, enteral carbohydrates, enteral lipids, and enteral proteins).
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
Data dictionary
C2707520 (UMLS CUI [1,1])
SUBJECT_ID
Item
Unique Identifier
string
C2348585 (UMLS CUI [1,1])
phv00282747.v1.p1 (dbGaP ID)
Cohort
Item
Cohort assignment FullTerm and PreTerm based upon gestational age at birth
string
C0599755 (UMLS CUI [1,1])
phv00282748.v1.p1 (dbGaP ID)
GestationalAge
Item
Gestational Age at Birth
float
C0456129 (UMLS CUI [1,1])
phv00282749.v1.p1 (dbGaP ID)
BirthWeight
Item
Birth Weight
float
C0005612 (UMLS CUI [1,1])
phv00282750.v1.p1 (dbGaP ID)
Sex
Item
Subject sex
string
C0079399 (UMLS CUI [1,1])
phv00282751.v1.p1 (dbGaP ID)
Race
Item
Race
string
C0034510 (UMLS CUI [1,1])
phv00282752.v1.p1 (dbGaP ID)
Ethnicity
Item
Ethnicity
string
C0015031 (UMLS CUI [1,1])
phv00282753.v1.p1 (dbGaP ID)
BirthMode
Item
Mode of Delivery
string
C1555567 (UMLS CUI [1,1])
phv00282754.v1.p1 (dbGaP ID)
Babies_with_NEC_Dx
Item
Confirmed diagnosis of necrotizing enterocolitis
string
C1442826 (UMLS CUI [1,1])
C1547321 (UMLS CUI [1,2])
phv00282755.v1.p1 (dbGaP ID)
NEC_Dx_DOL
Item
Day of life at Diagnosis of necrotizing enterocolitis
integer
C1828181 (UMLS CUI [1,1])
C1442826 (UMLS CUI [1,2])
C0443281 (UMLS CUI [1,3])
C0439228 (UMLS CUI [1,4])
phv00282756.v1.p1 (dbGaP ID)
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