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Culture results

1 Formulários  
  1. StudyEvent: ODM
    1. Culture results
Administrative data
Descrição

Administrative data

Alias
UMLS CUI-1
C1320722
Subject Number
Descrição

Subject Number

Tipo de dados

text

Alias
UMLS CUI [1]
C2348585
Visit type
Descrição

Visit type

Tipo de dados

integer

Alias
UMLS CUI [1,1]
C0545082
UMLS CUI [1,2]
C0332307
Nasal Swab Sample
Descrição

Nasal Swab Sample

Alias
UMLS CUI-1
C3669207
Was a sample taken?
Descrição

Nasal Swab Sample

Tipo de dados

text

Alias
UMLS CUI [1]
C3669207
Date of sample
Descrição

day month year

Tipo de dados

date

Alias
UMLS CUI [1]
C1302413
Time of sample
Descrição

00:00-23:59

Tipo de dados

time

Alias
UMLS CUI [1,1]
C0040223
UMLS CUI [1,2]
C3669207
If there was no sample taken, please specify reason
Descrição

Reason, no sample taken

Tipo de dados

integer

Alias
UMLS CUI [1,1]
C0566251
UMLS CUI [1,2]
C1298908
UMLS CUI [1,3]
C3669207
If other reason, please specify
Descrição

Other reason, no sample taken

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0205394
UMLS CUI [1,2]
C0566251
UMLS CUI [1,3]
C1298908
UMLS CUI [1,4]
C3669207
Culture Results for Nasal Swab
Descrição

Culture Results for Nasal Swab

Alias
UMLS CUI-1
C3669207
UMLS CUI-2
C1274040
Lab test date
Descrição

day month year

Tipo de dados

date

Alias
UMLS CUI [1]
C2826247
Lab test time
Descrição

00:00-23:59

Tipo de dados

time

Alias
UMLS CUI [1]
C0429928
Was there any growth after 2 days?
Descrição

Growth of culture

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0018284
UMLS CUI [1,2]
C3669207
Growth of culture, specification
Descrição

Normal flora: includes coagulase-negative staphylococci, Viridans streptococci, Corynebacterium species, Non-pathogenic Neisseria species, Stomatococcus species, Micrococcus species, non-haemolytic Streptococcus species)

Tipo de dados

integer

Alias
UMLS CUI [1,1]
C2348235
UMLS CUI [1,2]
C0018284
UMLS CUI [1,3]
C3669207
Isolate Detail for Nasal Swab
Descrição

Isolate Detail for Nasal Swab

Alias
UMLS CUI-1
C1764827
UMLS CUI-2
C3669207
Isolate number
Descrição

Isolate number

Tipo de dados

text

Alias
UMLS CUI [1,1]
C1764827
UMLS CUI [1,2]
C0237753
Visit Type
Descrição

Visit Type

Tipo de dados

integer

Alias
UMLS CUI [1,1]
C0545082
UMLS CUI [1,2]
C0332307
Semiquantitation/ growth estimate
Descrição

Semiquantitation/ growth estimate

Tipo de dados

integer

Alias
UMLS CUI [1]
C0018284
Identification of microorganism
Descrição

Identification of microorganism

Tipo de dados

integer

Alias
UMLS CUI [1,1]
C0205396
UMLS CUI [1,2]
C0596932
If other identification of microorganism, please specify
Descrição

Other identification of microorganism

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0205394
UMLS CUI [1,2]
C0205396
UMLS CUI [1,3]
C0596932
Was Staphylococcus aureus recovered?
Descrição

Recovering of Staphylococcus aureus

Tipo de dados

integer

Alias
UMLS CUI [1]
C0038172
If Staphylococcus aureus recovered, isolate(s) not sent to central laboratory, please specify reason
Descrição

Staphylococcus aureus recovered, isolate(s) not sent to central laboratory, Reason

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0038172
UMLS CUI [1,2]
C1880016
UMLS CUI [1,3]
C1515023
UMLS CUI [1,4]
C1272696
UMLS CUI [1,5]
C0566251
Wound/Lesion specimen - bacteriology
Descrição

Wound/Lesion specimen - bacteriology

Alias
UMLS CUI-1
C0043241
UMLS CUI-2
C0004644
Was a sample taken?
Descrição

Sample taken

Tipo de dados

text

Alias
UMLS CUI [1]
C0200345
Date of sample
Descrição

day month year

Tipo de dados

date

Alias
UMLS CUI [1]
C1302413
Time of sample
Descrição

00:00-23:59

Tipo de dados

time

Alias
UMLS CUI [1,1]
C0040223
UMLS CUI [1,2]
C3669207
If there was no sample taken, please specify reason
Descrição

Reason, no sample taken

Tipo de dados

integer

Alias
UMLS CUI [1,1]
C0566251
UMLS CUI [1,2]
C1298908
UMLS CUI [1,3]
C3669207
If other reason, please specify
Descrição

Other reason, no sample taken

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0205394
UMLS CUI [1,2]
C0566251
UMLS CUI [1,3]
C1298908
UMLS CUI [1,4]
C3669207
Specimen collection method
Descrição

Specimen collection method

Tipo de dados

integer

Alias
UMLS CUI [1]
C1547864
Reason for selecting skin swab collection method
Descrição

Reason for selecting skin swab collection method

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0566251
UMLS CUI [1,2]
C1123023
UMLS CUI [1,3]
C1261188
UMLS CUI [1,4]
C1547864
Gram Stain Results for Wound/Lesion Bacteriology Specimen
Descrição

Gram Stain Results for Wound/Lesion Bacteriology Specimen

Alias
UMLS CUI-1
C0061856
UMLS CUI-2
C1274040
UMLS CUI-3
C0004644
Lab test date
Descrição

day month year

Tipo de dados

date

Alias
UMLS CUI [1,1]
C0022885
UMLS CUI [1,2]
C2826247
Lab test time
Descrição

00:00-23:59

Tipo de dados

time

Alias
UMLS CUI [1,1]
C0022885
UMLS CUI [1,2]
C0429928
White Blood Cells (per 100x LPF)
Descrição

White Blood Cells

Tipo de dados

integer

Alias
UMLS CUI [1]
C0023508
Epithelial Cells (per 100x LPF)
Descrição

Epithelial Cells

Tipo de dados

integer

Alias
UMLS CUI [1]
C1273342
Bacteria (per 1000x) in Skin Curettage/Aseptic Needle Aspiration/Skin Swab Sample
Descrição

Bacteria in Skin Curettage/Aseptic Needle Aspiration/Skin Swab Sample

Tipo de dados

integer

Alias
UMLS CUI [1,1]
C0004611
UMLS CUI [1,2]
C1123023
UMLS CUI [1,3]
C0010468
UMLS CUI [2,1]
C0004611
UMLS CUI [2,2]
C0349707
UMLS CUI [3,1]
C0004611
UMLS CUI [3,2]
C1123023
UMLS CUI [3,3]
C1261188
UMLS CUI [3,4]
C0681875
Bacteria (per 1000x) in Skin Curettage/Aseptic Needle Aspiration/Skin Swab Sample
Descrição

Results of Bacteria

Tipo de dados

integer

Alias
UMLS CUI [1,1]
C0004611
UMLS CUI [1,2]
C1254595
Culture results for skin curettage
Descrição

Culture results for skin curettage

Alias
UMLS CUI-1
C1123023
UMLS CUI-2
C0010468
UMLS CUI-3
C1254595
Was there any growth after 2 days?
Descrição

Growth of culture

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0430400
UMLS CUI [1,2]
C0018284
If there was a growth, please specify
Descrição

Normal skin flora: includes coagulase negative staphylococci, alpha-haemolytic Streptococcus species (not Group D), Corynebacterium species, Micrococcus species)

Tipo de dados

integer

Alias
UMLS CUI [1,1]
C0018284
UMLS CUI [1,2]
C2348235
Isolate Detail for Skin Curettage
Descrição

Isolate Detail for Skin Curettage

Alias
UMLS CUI-1
C1764827
UMLS CUI-2
C1123023
UMLS CUI-3
C0010468
Isolate number
Descrição

Isolate number

Tipo de dados

text

Alias
UMLS CUI [1,1]
C1764827
UMLS CUI [1,2]
C0237753
Visit Type
Descrição

Visit Type

Tipo de dados

integer

Alias
UMLS CUI [1,1]
C0545082
UMLS CUI [1,2]
C0332307
Semiquantitation/ growth estimate
Descrição

Semiquantitation/ growth estimate

Tipo de dados

integer

Alias
UMLS CUI [1]
C0018284
Identification of microorganism
Descrição

Identification of microorganism

Tipo de dados

integer

Alias
UMLS CUI [1,1]
C0205396
UMLS CUI [1,2]
C0596932
If other identification of microorganism, please specify
Descrição

Other identification of microorganism

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0205394
UMLS CUI [1,2]
C0205396
UMLS CUI [1,3]
C0596932
If a pathogen(s) was recovered, was the isolate(s) sent from the local laboratory to the central laboratory?
Descrição

Isolate(s) sent to central laboratory

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0370003
UMLS CUI [1,2]
C1515023
UMLS CUI [1,3]
C1880016
If isolate(s) not sent to central laboratory, please specify reason
Descrição

Isolate(s) not sent to central laboratory, Reason

Tipo de dados

text

Alias
UMLS CUI [1,1]
C1880016
UMLS CUI [1,2]
C1515023
UMLS CUI [1,3]
C1272696
UMLS CUI [1,4]
C0566251
Culture results for aseptic needle aspirate
Descrição

Culture results for aseptic needle aspirate

Alias
UMLS CUI-1
C0430400
UMLS CUI-2
C1274040
UMLS CUI-3
C0232920
UMLS CUI-4
C0936232
UMLS CUI-5
C0370199
Was there any growth after 3 days?
Descrição

Growth of culture

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0430400
UMLS CUI [1,2]
C0018284
If there was a growth, please specify
Descrição

Normal skin flora: includes coagulase negative staphylococci, alpha-haemolytic Streptococcus species (not Group D), Corynebacterium species, Micrococcus species)

Tipo de dados

integer

Alias
UMLS CUI [1,1]
C0018284
UMLS CUI [1,2]
C2348235
If normal flora was isolated, were any of the organisms isolated in pure culture?
Descrição

Isolation of organism in pure culture

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0205409
UMLS CUI [1,2]
C0596932
If organisms was isolated in pure culture, select organism
Descrição

Organism selection

Tipo de dados

integer

Alias
UMLS CUI [1,1]
C0029235
UMLS CUI [1,2]
C0681875
Isolate Detail for aseptic needle aspirate
Descrição

Isolate Detail for aseptic needle aspirate

Alias
UMLS CUI-1
C1764827
UMLS CUI-2
C0232920
UMLS CUI-3
C0370199
Isolate number
Descrição

Isolate number

Tipo de dados

text

Alias
UMLS CUI [1,1]
C1764827
UMLS CUI [1,2]
C0237753
Visit Type
Descrição

Visit Type

Tipo de dados

integer

Alias
UMLS CUI [1,1]
C0545082
UMLS CUI [1,2]
C0332307
Semiquantitation/ growth estimate
Descrição

Semiquantitation/ growth estimate

Tipo de dados

integer

Alias
UMLS CUI [1]
C0018284
Identification of microorganism
Descrição

Identification of microorganism

Tipo de dados

integer

Alias
UMLS CUI [1,1]
C0205396
UMLS CUI [1,2]
C0596932
If other identification of microorganism, please specify
Descrição

Other identification of microorganism

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0205394
UMLS CUI [1,2]
C0205396
UMLS CUI [1,3]
C0596932
If a pathogen(s) was recovered, was the isolate(s) sent from the local laboratory to the central laboratory?
Descrição

Isolate(s) sent to central laboratory

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0370003
UMLS CUI [1,2]
C1515023
UMLS CUI [1,3]
C1880016
If isolate(s) not sent to central laboratory, please specify reason
Descrição

Isolate(s) not sent to central laboratory, Reason

Tipo de dados

text

Alias
UMLS CUI [1,1]
C1880016
UMLS CUI [1,2]
C1515023
UMLS CUI [1,3]
C1272696
UMLS CUI [1,4]
C0566251
Culture results for skin swab
Descrição

Culture results for skin swab

Alias
UMLS CUI-1
C1123023
UMLS CUI-2
C1261188
UMLS CUI-3
C1254595
Was there any growth after 2 days?
Descrição

Growth of culture

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0430400
UMLS CUI [1,2]
C0018284
If there was a growth, please specify
Descrição

Normal skin flora: includes coagulase negative staphylococci, alpha-haemolytic Streptococcus species (not Group D), Corynebacterium species, Micrococcus species)

Tipo de dados

integer

Alias
UMLS CUI [1,1]
C0018284
UMLS CUI [1,2]
C2348235
Isolate Detail for Skin Swab
Descrição

Isolate Detail for Skin Swab

Alias
UMLS CUI-1
C1764827
UMLS CUI-2
C1123023
UMLS CUI-3
C1261188
Isolate number
Descrição

Isolate number

Tipo de dados

text

Alias
UMLS CUI [1,1]
C1764827
UMLS CUI [1,2]
C0237753
Visit Type
Descrição

Visit Type

Tipo de dados

integer

Alias
UMLS CUI [1,1]
C0545082
UMLS CUI [1,2]
C0332307
Semiquantitation/ growth estimate
Descrição

Semiquantitation/ growth estimate

Tipo de dados

integer

Alias
UMLS CUI [1]
C0018284
Identification of microorganism
Descrição

Identification of microorganism

Tipo de dados

integer

Alias
UMLS CUI [1,1]
C0205396
UMLS CUI [1,2]
C0596932
If other identification of microorganism, please specify
Descrição

Other identification of microorganism

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0205394
UMLS CUI [1,2]
C0205396
UMLS CUI [1,3]
C0596932
If a pathogen(s) was recovered, was the isolate(s) sent from the local laboratory to the central laboratory?
Descrição

Isolate(s) sent to central laboratory

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0370003
UMLS CUI [1,2]
C1515023
UMLS CUI [1,3]
C1880016
If isolate(s) not sent to central laboratory, please specify reason
Descrição

Isolate(s) not sent to central laboratory, Reason

Tipo de dados

text

Alias
UMLS CUI [1,1]
C1880016
UMLS CUI [1,2]
C1515023
UMLS CUI [1,3]
C1272696
UMLS CUI [1,4]
C0566251
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Culture results

1 Formulários
  1. StudyEvent: ODM
    1. Culture results
Name
Tipo
Description | Question | Decode (Coded Value)
Tipo de dados
Alias
Item Group
Administrative data
C1320722 (UMLS CUI-1)
Subject Number
Item
Subject Number
text
C2348585 (UMLS CUI [1])
Item
Visit type
integer
C0545082 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
Visit type
Code List
Visit type
CL Item
Visit 1 (1)
CL Item
Visit 2 (2)
CL Item
Visit 3 (3)
CL Item
Visit 4 (4)
CL Item
Visit 5 (5)
Item Group
Nasal Swab Sample
C3669207 (UMLS CUI-1)
Item
Was a sample taken?
text
C3669207 (UMLS CUI [1])
Nasal Swab Sample
Code List
Was a sample taken?
CL Item
Yes (Y)
CL Item
No (N)
Date of sample
Item
Date of sample
date
C1302413 (UMLS CUI [1])
Time of sample
Item
Time of sample
time
C0040223 (UMLS CUI [1,1])
C3669207 (UMLS CUI [1,2])
Item
If there was no sample taken, please specify reason
integer
C0566251 (UMLS CUI [1,1])
C1298908 (UMLS CUI [1,2])
C3669207 (UMLS CUI [1,3])
Reason, no sample taken
Code List
If there was no sample taken, please specify reason
CL Item
Patient Refused (1)
CL Item
Parent/legal guardian refused (2)
CL Item
Patient exceptionally uncooperative (3)
CL Item
Investigator deemed inappropriate/unnecessary (4)
CL Item
Other (5)
Other reason, no sample taken
Item
If other reason, please specify
text
C0205394 (UMLS CUI [1,1])
C0566251 (UMLS CUI [1,2])
C1298908 (UMLS CUI [1,3])
C3669207 (UMLS CUI [1,4])
Item Group
Culture Results for Nasal Swab
C3669207 (UMLS CUI-1)
C1274040 (UMLS CUI-2)
Lab test date
Item
Lab test date
date
C2826247 (UMLS CUI [1])
Lab test time
Item
Lab test time
time
C0429928 (UMLS CUI [1])
Item
Was there any growth after 2 days?
text
C0018284 (UMLS CUI [1,1])
C3669207 (UMLS CUI [1,2])
Growth of culture
Code List
Was there any growth after 2 days?
CL Item
No (N)
CL Item
Yes (Y)
Item
Growth of culture, specification
integer
C2348235 (UMLS CUI [1,1])
C0018284 (UMLS CUI [1,2])
C3669207 (UMLS CUI [1,3])
Growth of culture, specification
Code List
Growth of culture, specification
CL Item
Normal flora (1)
CL Item
Candida species, other yeast or mould (2)
CL Item
Pathogen isolated for culture (3)
Item Group
Isolate Detail for Nasal Swab
C1764827 (UMLS CUI-1)
C3669207 (UMLS CUI-2)
Isolate number
Item
Isolate number
text
C1764827 (UMLS CUI [1,1])
C0237753 (UMLS CUI [1,2])
Item
Visit Type
integer
C0545082 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
Visit Type
Code List
Visit Type
CL Item
Visit 1 (1)
CL Item
Visit 2 (2)
CL Item
Visit 3 (3)
CL Item
Visit 4 (4)
CL Item
Visit 5 (5)
Item
Semiquantitation/ growth estimate
integer
C0018284 (UMLS CUI [1])
Semiquantitation/ growth estimate
Code List
Semiquantitation/ growth estimate
CL Item
1+ (1)
CL Item
2+ (2)
CL Item
3+ (3)
CL Item
4+ (4)
Item
Identification of microorganism
integer
C0205396 (UMLS CUI [1,1])
C0596932 (UMLS CUI [1,2])
Identification
Code List
Identification of microorganism
CL Item
Acinetobacter anitratus  (1)
CL Item
Acinetobacter calcoaceticus  (2)
CL Item
Acinetobacter lwoffi  (3)
CL Item
Acinetobacter species  (4)
CL Item
Bacillus species  (5)
CL Item
Beta haemolytic streptococcus - non-groupable  (6)
CL Item
Beta haemolytic streptococcus group A  (7)
CL Item
Beta haemolytic streptococcus group B  (8)
CL Item
Beta haemolytic streptococcus group C  (9)
CL Item
Beta haemolytic streptococcus group D  (10)
CL Item
Beta haemolytic streptococcus group D not Enterococcus  (11)
CL Item
Beta haemolytic streptococcus group F  (12)
CL Item
Beta haemolytic streptococcus group G  (13)
CL Item
Citrobacter diversus  (14)
CL Item
Citrobacter freundii  (15)
CL Item
Citrobacter species  (16)
CL Item
Enterobacter aerogenes  (17)
CL Item
Enterobacter agglomerans  (18)
CL Item
Enterobacter amnigenus  (19)
CL Item
Enterobacter cloacae  (20)
CL Item
Enterobacter gergoviae  (21)
CL Item
Enterobacter sakazakii  (22)
CL Item
Enterobacter species  (23)
CL Item
Enterobacteriaceae  (24)
CL Item
Enterococcus faecalis  (25)
CL Item
Enterococcus faecium  (26)
CL Item
Enterococcus species  (27)
CL Item
Escherichia coli  (28)
CL Item
Gram negative non-Enterobacteriaceae  (29)
CL Item
Haemophilus influenzae  (30)
CL Item
Haemophilus parainfluenzae  (31)
CL Item
Haemophilus species  (32)
CL Item
Klebsiella oxytoca  (33)
CL Item
Klebsiella pneumoniae  (34)
CL Item
Klebsiella species  (35)
CL Item
Mixed microbial flora  (36)
CL Item
Moraxella catarrhalis  (37)
CL Item
Moraxella species  (38)
CL Item
Morganella morganii  (39)
CL Item
Neisseria meningitidis  (40)
CL Item
Neisseria species  (41)
CL Item
Non-fermenting gram negative bacilli  (42)
CL Item
Oxidase positive gram negative rod  (43)
CL Item
Pantoea species  (44)
CL Item
Pasteurella haemolytica  (45)
CL Item
Pasteurella multocida  (46)
CL Item
Pasteurella species  (47)
CL Item
Proteus mirabilis  (48)
CL Item
Proteus penneri  (49)
CL Item
Proteus species  (50)
CL Item
Pseudomonas aeruginosa  (51)
CL Item
Pseudomonas alcaligenes  (52)
CL Item
Pseudomonas fluorescens  (53)
CL Item
Pseudomonas fluorescens/putida group  (54)
CL Item
Pseudomonas paucimobilis  (55)
CL Item
Pseudomonas species  (56)
CL Item
Pseudomonas stutzeri  (57)
CL Item
Pseudomonas vesicularis  (58)
CL Item
Ralstonia pickettii  (59)
CL Item
Serratia marcescens  (60)
CL Item
Serratia odorifera  (61)
CL Item
Serratia species  (62)
CL Item
Staphylococcus aureus  (63)
CL Item
Streptococcus agalactiae  (64)
CL Item
Streptococcus anginosis  (65)
CL Item
Streptococcus constellatus  (66)
CL Item
Streptococcus dysgalactiae  (67)
CL Item
Streptococcus dysgalactiae - equisimilis  (68)
CL Item
Streptococcus equisimilis  (69)
CL Item
Streptococcus intermedius  (70)
CL Item
Streptococcus pneumoniae  (71)
CL Item
Streptococcus pyogenes  (72)
CL Item
Streptococcus species  (73)
CL Item
Unidentified organism  (74)
CL Item
Other (75)
Other identification of microorganism
Item
If other identification of microorganism, please specify
text
C0205394 (UMLS CUI [1,1])
C0205396 (UMLS CUI [1,2])
C0596932 (UMLS CUI [1,3])
Item
Was Staphylococcus aureus recovered?
integer
C0038172 (UMLS CUI [1])
Recovering of Staphylococcus aureus
Code List
Was Staphylococcus aureus recovered?
CL Item
No, S. aureus not recovered (1)
CL Item
Yes, isolate(s) sent to the central laboratory (2)
CL Item
Staphylococcus aureus recovered, isolate(s) not sent to central laboratory (3)
Staphylococcus aureus recovered, isolate(s) not sent to central laboratory, Reason
Item
If Staphylococcus aureus recovered, isolate(s) not sent to central laboratory, please specify reason
text
C0038172 (UMLS CUI [1,1])
C1880016 (UMLS CUI [1,2])
C1515023 (UMLS CUI [1,3])
C1272696 (UMLS CUI [1,4])
C0566251 (UMLS CUI [1,5])
Item Group
Wound/Lesion specimen - bacteriology
C0043241 (UMLS CUI-1)
C0004644 (UMLS CUI-2)
Item
Was a sample taken?
text
C0200345 (UMLS CUI [1])
Sample taken
Code List
Was a sample taken?
CL Item
Yes (Y)
CL Item
No (N)
Date of sample
Item
Date of sample
date
C1302413 (UMLS CUI [1])
Time of sample
Item
Time of sample
time
C0040223 (UMLS CUI [1,1])
C3669207 (UMLS CUI [1,2])
Item
If there was no sample taken, please specify reason
integer
C0566251 (UMLS CUI [1,1])
C1298908 (UMLS CUI [1,2])
C3669207 (UMLS CUI [1,3])
Reason, no sample taken
Code List
If there was no sample taken, please specify reason
CL Item
No culturable material present (1)
CL Item
Parent/legal guardian refused (2)
CL Item
Patient exceptionally uncooperative (3)
CL Item
Patient Refused (4)
CL Item
Other (5)
Other reason, no sample taken
Item
If other reason, please specify
text
C0205394 (UMLS CUI [1,1])
C0566251 (UMLS CUI [1,2])
C1298908 (UMLS CUI [1,3])
C3669207 (UMLS CUI [1,4])
Item
Specimen collection method
integer
C1547864 (UMLS CUI [1])
Specimen collection method
Code List
Specimen collection method
CL Item
Skin curettage (1)
CL Item
Aseptic needle aspiration (2)
CL Item
Skin Swab (3)
Reason for selecting skin swab collection method
Item
Reason for selecting skin swab collection method
text
C0566251 (UMLS CUI [1,1])
C1123023 (UMLS CUI [1,2])
C1261188 (UMLS CUI [1,3])
C1547864 (UMLS CUI [1,4])
Item Group
Gram Stain Results for Wound/Lesion Bacteriology Specimen
C0061856 (UMLS CUI-1)
C1274040 (UMLS CUI-2)
C0004644 (UMLS CUI-3)
Lab test date
Item
Lab test date
date
C0022885 (UMLS CUI [1,1])
C2826247 (UMLS CUI [1,2])
Lab test time
Item
Lab test time
time
C0022885 (UMLS CUI [1,1])
C0429928 (UMLS CUI [1,2])
Item
White Blood Cells (per 100x LPF)
integer
C0023508 (UMLS CUI [1])
White Blood Cells
Code List
White Blood Cells (per 100x LPF)
CL Item
0 or none  (1)
CL Item
1-9 or few  (2)
CL Item
10-24 or moderate  (3)
CL Item
>=25 or many (4)
Item
Epithelial Cells (per 100x LPF)
integer
C1273342 (UMLS CUI [1])
Epithelial Cells
Code List
Epithelial Cells (per 100x LPF)
CL Item
0 or none  (1)
CL Item
1-9 or few  (2)
CL Item
10-24 or moderate  (3)
CL Item
>=25 or many (4)
Item
Bacteria (per 1000x) in Skin Curettage/Aseptic Needle Aspiration/Skin Swab Sample
integer
C0004611 (UMLS CUI [1,1])
C1123023 (UMLS CUI [1,2])
C0010468 (UMLS CUI [1,3])
C0004611 (UMLS CUI [2,1])
C0349707 (UMLS CUI [2,2])
C0004611 (UMLS CUI [3,1])
C1123023 (UMLS CUI [3,2])
C1261188 (UMLS CUI [3,3])
C0681875 (UMLS CUI [3,4])
Bacteria in Skin Curettage/Aseptic Needle Aspiration/Skin Swab Sample
Code List
Bacteria (per 1000x) in Skin Curettage/Aseptic Needle Aspiration/Skin Swab Sample
CL Item
Gram positive bacilli (1)
CL Item
Gram negative diplococci (2)
CL Item
Gram positive diplococci (3)
CL Item
Gram positive cocci in clusters (4)
CL Item
Gram positive cocci in chains (5)
CL Item
Gram variable bacilli (6)
CL Item
Gram positive cocci in pairs (7)
CL Item
Gram negative bacilli (8)
CL Item
Gram negative cocci (9)
CL Item
Gram negative coccobacilli (10)
CL Item
Hyphal elements (11)
CL Item
Yeast (12)
Item
Bacteria (per 1000x) in Skin Curettage/Aseptic Needle Aspiration/Skin Swab Sample
integer
C0004611 (UMLS CUI [1,1])
C1254595 (UMLS CUI [1,2])
Bacteria in Skin Curettage/Aseptic Needle Aspiration/Skin Swab Sample
Code List
Bacteria (per 1000x) in Skin Curettage/Aseptic Needle Aspiration/Skin Swab Sample
CL Item
0 or none  (1)
CL Item
1-4 or occasional  (2)
CL Item
5-9 or few  (3)
CL Item
10-50 or moderate  (4)
CL Item
>50 or many  (5)
CL Item
<1 or rare (6)
Item Group
Culture results for skin curettage
C1123023 (UMLS CUI-1)
C0010468 (UMLS CUI-2)
C1254595 (UMLS CUI-3)
Item
Was there any growth after 2 days?
text
C0430400 (UMLS CUI [1,1])
C0018284 (UMLS CUI [1,2])
Growth of culture
Code List
Was there any growth after 2 days?
CL Item
No (no growth) (N)
CL Item
Yes (Y)
Item
If there was a growth, please specify
integer
C0018284 (UMLS CUI [1,1])
C2348235 (UMLS CUI [1,2])
Culture growth, specification
Code List
If there was a growth, please specify
CL Item
Normal skin flora (1)
CL Item
Candida species, other yeast or mould (2)
CL Item
Pathogen isolated for culture (3)
Item Group
Isolate Detail for Skin Curettage
C1764827 (UMLS CUI-1)
C1123023 (UMLS CUI-2)
C0010468 (UMLS CUI-3)
Isolate number
Item
Isolate number
text
C1764827 (UMLS CUI [1,1])
C0237753 (UMLS CUI [1,2])
Item
Visit Type
integer
C0545082 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
Visit Type
Code List
Visit Type
CL Item
Visit 1 (1)
CL Item
Visit 2 (2)
CL Item
Visit 3 (3)
CL Item
Visit 4 (4)
CL Item
Visit 5 (5)
Item
Semiquantitation/ growth estimate
integer
C0018284 (UMLS CUI [1])
Semiquantitation/ growth estimate
Code List
Semiquantitation/ growth estimate
CL Item
1+ (1)
CL Item
2+ (2)
CL Item
3+ (3)
CL Item
4+ (4)
Item
Identification of microorganism
integer
C0205396 (UMLS CUI [1,1])
C0596932 (UMLS CUI [1,2])
Identification
Code List
Identification of microorganism
CL Item
Acinetobacter anitratus  (1)
CL Item
Acinetobacter calcoaceticus  (2)
CL Item
Acinetobacter lwoffi  (3)
CL Item
Acinetobacter species  (4)
CL Item
Aeromonas species  (5)
CL Item
Aeromonas hydrophila  (6)
CL Item
Bacillus species  (7)
CL Item
Beta haemolytic streptococcus - non-groupable  (8)
CL Item
Beta haemolytic streptococcus group A  (9)
CL Item
Beta haemolytic streptococcus group B  (10)
CL Item
Beta haemolytic streptococcus group C  (11)
CL Item
Beta haemolytic streptococcus group D  (12)
CL Item
Beta haemolytic streptococcus group D not Enterococcus  (13)
CL Item
Beta haemolytic streptococcus group F  (14)
CL Item
Beta haemolytic streptococcus group G  (15)
CL Item
Citrobacter diversus  (16)
CL Item
Citrobacter freundii  (17)
CL Item
Citrobacter species  (18)
CL Item
Enterobacter aerogenes  (19)
CL Item
Enterobacter agglomerans  (20)
CL Item
Enterobacter amnigenus  (21)
CL Item
Enterobacter cloacae  (22)
CL Item
Enterobacter gergoviae  (23)
CL Item
Enterobacter sakazakii  (24)
CL Item
Enterobacter species  (25)
CL Item
Enterobacteriaceae  (26)
CL Item
Enterococcus faecalis  (27)
CL Item
Enterococcus faecium  (28)
CL Item
Enterococcus species  (29)
CL Item
Escherichia coli  (30)
CL Item
Gram negative non-Enterobacteriaceae  (31)
CL Item
Haemophilus influenzae  (32)
CL Item
Haemophilus parainfluenzae  (33)
CL Item
Haemophilus species  (34)
CL Item
Klebsiella oxytoca  (35)
CL Item
Klebsiella pneumoniae  (36)
CL Item
Klebsiella species  (37)
CL Item
Moraxella species  (38)
CL Item
Morganella morganii  (39)
CL Item
Non-fermenting gram negative bacilli  (40)
CL Item
Oxidase positive gram negative rod  (41)
CL Item
Pantoea species  (42)
CL Item
Pasteurella haemolytica  (43)
CL Item
Pasteurella multocida  (44)
CL Item
Pasteurella species  (45)
CL Item
Proteus mirabilis  (46)
CL Item
Proteus penneri  (47)
CL Item
Proteus species  (48)
CL Item
Pseudomonas aeruginosa  (49)
CL Item
Pseudomonas alcaligenes  (50)
CL Item
Pseudomonas fluorescens  (51)
CL Item
Pseudomonas fluorescens/putida group  (52)
CL Item
Pseudomonas paucimobilis  (53)
CL Item
Pseudomonas species  (54)
CL Item
Pseudomonas stutzeri  (55)
CL Item
Pseudomonas vesicularis  (56)
CL Item
Ralstonia pickettii  (57)
CL Item
Serratia marcescens  (58)
CL Item
Serratia odorifera  (59)
CL Item
Serratia species  (60)
CL Item
Staphylococcus aureus  (61)
CL Item
Streptococcus agalactiae  (62)
CL Item
Streptococcus anginosis  (63)
CL Item
Streptococcus constellatus  (64)
CL Item
Streptococcus species - non-haemolytic  (65)
CL Item
Streptococcus dysgalactiae - equisimilis  (66)
CL Item
Streptococcus equisimilis  (67)
CL Item
Streptococcus intermedius  (68)
CL Item
Streptococcus pyogenes  (69)
CL Item
Streptococcus species  (70)
CL Item
Unidentified organism (71)
Other identification of microorganism
Item
If other identification of microorganism, please specify
text
C0205394 (UMLS CUI [1,1])
C0205396 (UMLS CUI [1,2])
C0596932 (UMLS CUI [1,3])
Item
If a pathogen(s) was recovered, was the isolate(s) sent from the local laboratory to the central laboratory?
text
C0370003 (UMLS CUI [1,1])
C1515023 (UMLS CUI [1,2])
C1880016 (UMLS CUI [1,3])
Isolate(s) sent to central laboratory
Code List
If a pathogen(s) was recovered, was the isolate(s) sent from the local laboratory to the central laboratory?
CL Item
Yes (Y)
CL Item
No (N)
Isolate(s) not sent to central laboratory, Reason
Item
If isolate(s) not sent to central laboratory, please specify reason
text
C1880016 (UMLS CUI [1,1])
C1515023 (UMLS CUI [1,2])
C1272696 (UMLS CUI [1,3])
C0566251 (UMLS CUI [1,4])
Item Group
Culture results for aseptic needle aspirate
C0430400 (UMLS CUI-1)
C1274040 (UMLS CUI-2)
C0232920 (UMLS CUI-3)
C0936232 (UMLS CUI-4)
C0370199 (UMLS CUI-5)
Item
Was there any growth after 3 days?
text
C0430400 (UMLS CUI [1,1])
C0018284 (UMLS CUI [1,2])
Growth of culture
Code List
Was there any growth after 3 days?
CL Item
No (no growth) (N)
CL Item
Yes (Y)
Item
If there was a growth, please specify
integer
C0018284 (UMLS CUI [1,1])
C2348235 (UMLS CUI [1,2])
Culture growth, specification
Code List
If there was a growth, please specify
CL Item
Normal skin flora (1)
CL Item
Candida species, other yeast or mould (2)
CL Item
Pathogen isolated for culture (3)
Item
If normal flora was isolated, were any of the organisms isolated in pure culture?
text
C0205409 (UMLS CUI [1,1])
C0596932 (UMLS CUI [1,2])
Isolation of organism in pure culture
Code List
If normal flora was isolated, were any of the organisms isolated in pure culture?
CL Item
No (N)
CL Item
Yes (Y)
Item
If organisms was isolated in pure culture, select organism
integer
C0029235 (UMLS CUI [1,1])
C0681875 (UMLS CUI [1,2])
Isolation of organism in pure culture
Code List
If organisms was isolated in pure culture, select organism
CL Item
Coagulase negative staphylococci (1)
CL Item
Alpha-haemolytic Streptococcus species (not Group D) (2)
CL Item
Corynebacterium species (3)
CL Item
Micrococcus species (4)
Item Group
Isolate Detail for aseptic needle aspirate
C1764827 (UMLS CUI-1)
C0232920 (UMLS CUI-2)
C0370199 (UMLS CUI-3)
Isolate number
Item
Isolate number
text
C1764827 (UMLS CUI [1,1])
C0237753 (UMLS CUI [1,2])
Item
Visit Type
integer
C0545082 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
Visit Type
Code List
Visit Type
CL Item
Visit 1 (1)
CL Item
Visit 2 (2)
CL Item
Visit 3 (3)
CL Item
Visit 4 (4)
CL Item
Visit 5 (5)
Item
Semiquantitation/ growth estimate
integer
C0018284 (UMLS CUI [1])
Semiquantitation/ growth estimate
Code List
Semiquantitation/ growth estimate
CL Item
1+ (1)
CL Item
2+ (2)
CL Item
3+ (3)
CL Item
4+ (4)
Item
Identification of microorganism
integer
C0205396 (UMLS CUI [1,1])
C0596932 (UMLS CUI [1,2])
Identification
Code List
Identification of microorganism
CL Item
Acinetobacter anitratus  (1)
CL Item
Acinetobacter calcoaceticus  (2)
CL Item
Acinetobacter lwoffi  (3)
CL Item
Acinetobacter species  (4)
CL Item
Aeromonas species  (5)
CL Item
Aeromonas hydrophila  (6)
CL Item
Bacillus species  (7)
CL Item
Beta haemolytic streptococcus - non-groupable  (8)
CL Item
Beta haemolytic streptococcus group A  (9)
CL Item
Beta haemolytic streptococcus group B  (10)
CL Item
Beta haemolytic streptococcus group C  (11)
CL Item
Beta haemolytic streptococcus group D  (12)
CL Item
Beta haemolytic streptococcus group D not Enterococcus  (13)
CL Item
Beta haemolytic streptococcus group F  (14)
CL Item
Beta haemolytic streptococcus group G  (15)
CL Item
Citrobacter diversus  (16)
CL Item
Citrobacter freundii  (17)
CL Item
Citrobacter species  (18)
CL Item
Enterobacter aerogenes  (19)
CL Item
Enterobacter agglomerans  (20)
CL Item
Enterobacter amnigenus  (21)
CL Item
Enterobacter cloacae  (22)
CL Item
Enterobacter gergoviae  (23)
CL Item
Enterobacter sakazakii  (24)
CL Item
Enterobacter species  (25)
CL Item
Enterobacteriaceae  (26)
CL Item
Enterococcus faecalis  (27)
CL Item
Enterococcus faecium  (28)
CL Item
Enterococcus species  (29)
CL Item
Escherichia coli  (30)
CL Item
Gram negative non-Enterobacteriaceae  (31)
CL Item
Haemophilus influenzae  (32)
CL Item
Haemophilus parainfluenzae  (33)
CL Item
Haemophilus species  (34)
CL Item
Klebsiella oxytoca  (35)
CL Item
Klebsiella pneumoniae  (36)
CL Item
Klebsiella species  (37)
CL Item
Moraxella species  (38)
CL Item
Morganella morganii  (39)
CL Item
Non-fermenting gram negative bacilli  (40)
CL Item
Oxidase positive gram negative rod  (41)
CL Item
Pantoea species  (42)
CL Item
Pasteurella haemolytica  (43)
CL Item
Pasteurella multocida  (44)
CL Item
Pasteurella species  (45)
CL Item
Proteus mirabilis  (46)
CL Item
Proteus penneri  (47)
CL Item
Proteus species  (48)
CL Item
Pseudomonas aeruginosa  (49)
CL Item
Pseudomonas alcaligenes  (50)
CL Item
Pseudomonas fluorescens  (51)
CL Item
Pseudomonas fluorescens/putida group  (52)
CL Item
Pseudomonas paucimobilis  (53)
CL Item
Pseudomonas species  (54)
CL Item
Pseudomonas stutzeri  (55)
CL Item
Pseudomonas vesicularis  (56)
CL Item
Ralstonia pickettii  (57)
CL Item
Serratia marcescens  (58)
CL Item
Serratia odorifera  (59)
CL Item
Serratia species  (60)
CL Item
Staphylococcus aureus  (61)
CL Item
Streptococcus agalactiae  (62)
CL Item
Streptococcus anginosis  (63)
CL Item
Streptococcus constellatus  (64)
CL Item
Streptococcus species - non-haemolytic  (65)
CL Item
Streptococcus dysgalactiae - equisimilis  (66)
CL Item
Streptococcus equisimilis  (67)
CL Item
Streptococcus intermedius  (68)
CL Item
Streptococcus pyogenes  (69)
CL Item
Streptococcus species  (70)
CL Item
Unidentified organism (71)
Other identification of microorganism
Item
If other identification of microorganism, please specify
text
C0205394 (UMLS CUI [1,1])
C0205396 (UMLS CUI [1,2])
C0596932 (UMLS CUI [1,3])
Item
If a pathogen(s) was recovered, was the isolate(s) sent from the local laboratory to the central laboratory?
text
C0370003 (UMLS CUI [1,1])
C1515023 (UMLS CUI [1,2])
C1880016 (UMLS CUI [1,3])
Isolate(s) sent to central laboratory
Code List
If a pathogen(s) was recovered, was the isolate(s) sent from the local laboratory to the central laboratory?
CL Item
Yes (Y)
CL Item
No (N)
Isolate(s) not sent to central laboratory, Reason
Item
If isolate(s) not sent to central laboratory, please specify reason
text
C1880016 (UMLS CUI [1,1])
C1515023 (UMLS CUI [1,2])
C1272696 (UMLS CUI [1,3])
C0566251 (UMLS CUI [1,4])
Item Group
Culture results for skin swab
C1123023 (UMLS CUI-1)
C1261188 (UMLS CUI-2)
C1254595 (UMLS CUI-3)
Item
Was there any growth after 2 days?
text
C0430400 (UMLS CUI [1,1])
C0018284 (UMLS CUI [1,2])
Growth of culture
Code List
Was there any growth after 2 days?
CL Item
No (no growth) (N)
CL Item
Yes (Y)
Item
If there was a growth, please specify
integer
C0018284 (UMLS CUI [1,1])
C2348235 (UMLS CUI [1,2])
Culture growth, specification
Code List
If there was a growth, please specify
CL Item
Normal skin flora (1)
CL Item
Candida species, other yeast or mould (2)
CL Item
Pathogen isolated for culture (3)
Item Group
Isolate Detail for Skin Swab
C1764827 (UMLS CUI-1)
C1123023 (UMLS CUI-2)
C1261188 (UMLS CUI-3)
Isolate number
Item
Isolate number
text
C1764827 (UMLS CUI [1,1])
C0237753 (UMLS CUI [1,2])
Item
Visit Type
integer
C0545082 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
Visit Type
Code List
Visit Type
CL Item
Visit 1 (1)
CL Item
Visit 2 (2)
CL Item
Visit 3 (3)
CL Item
Visit 4 (4)
CL Item
Visit 5 (5)
Item
Semiquantitation/ growth estimate
integer
C0018284 (UMLS CUI [1])
Semiquantitation/ growth estimate
Code List
Semiquantitation/ growth estimate
CL Item
1+ (1)
CL Item
2+ (2)
CL Item
3+ (3)
CL Item
4+ (4)
Item
Identification of microorganism
integer
C0205396 (UMLS CUI [1,1])
C0596932 (UMLS CUI [1,2])
Identification
Code List
Identification of microorganism
CL Item
Acinetobacter anitratus  (1)
CL Item
Acinetobacter calcoaceticus  (2)
CL Item
Acinetobacter lwoffi  (3)
CL Item
Acinetobacter species  (4)
CL Item
Aeromonas species  (5)
CL Item
Aeromonas hydrophila  (6)
CL Item
Bacillus species  (7)
CL Item
Beta haemolytic streptococcus - non-groupable  (8)
CL Item
Beta haemolytic streptococcus group A  (9)
CL Item
Beta haemolytic streptococcus group B  (10)
CL Item
Beta haemolytic streptococcus group C  (11)
CL Item
Beta haemolytic streptococcus group D  (12)
CL Item
Beta haemolytic streptococcus group D not Enterococcus  (13)
CL Item
Beta haemolytic streptococcus group F  (14)
CL Item
Beta haemolytic streptococcus group G  (15)
CL Item
Citrobacter diversus  (16)
CL Item
Citrobacter freundii  (17)
CL Item
Citrobacter species  (18)
CL Item
Enterobacter aerogenes  (19)
CL Item
Enterobacter agglomerans  (20)
CL Item
Enterobacter amnigenus  (21)
CL Item
Enterobacter cloacae  (22)
CL Item
Enterobacter gergoviae  (23)
CL Item
Enterobacter sakazakii  (24)
CL Item
Enterobacter species  (25)
CL Item
Enterobacteriaceae  (26)
CL Item
Enterococcus faecalis  (27)
CL Item
Enterococcus faecium  (28)
CL Item
Enterococcus species  (29)
CL Item
Escherichia coli  (30)
CL Item
Gram negative non-Enterobacteriaceae  (31)
CL Item
Haemophilus influenzae  (32)
CL Item
Haemophilus parainfluenzae  (33)
CL Item
Haemophilus species  (34)
CL Item
Klebsiella oxytoca  (35)
CL Item
Klebsiella pneumoniae  (36)
CL Item
Klebsiella species  (37)
CL Item
Moraxella species  (38)
CL Item
Morganella morganii  (39)
CL Item
Non-fermenting gram negative bacilli  (40)
CL Item
Oxidase positive gram negative rod  (41)
CL Item
Pantoea species  (42)
CL Item
Pasteurella haemolytica  (43)
CL Item
Pasteurella multocida  (44)
CL Item
Pasteurella species  (45)
CL Item
Proteus mirabilis  (46)
CL Item
Proteus penneri  (47)
CL Item
Proteus species  (48)
CL Item
Pseudomonas aeruginosa  (49)
CL Item
Pseudomonas alcaligenes  (50)
CL Item
Pseudomonas fluorescens  (51)
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Pseudomonas fluorescens/putida group  (52)
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Pseudomonas paucimobilis  (53)
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Pseudomonas species  (54)
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Pseudomonas stutzeri  (55)
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Pseudomonas vesicularis  (56)
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Ralstonia pickettii  (57)
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Serratia marcescens  (58)
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Serratia odorifera  (59)
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Serratia species  (60)
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Staphylococcus aureus  (61)
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Streptococcus agalactiae  (62)
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Streptococcus anginosis  (63)
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Streptococcus constellatus  (64)
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Streptococcus species - non-haemolytic  (65)
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Streptococcus dysgalactiae - equisimilis  (66)
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Streptococcus equisimilis  (67)
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Streptococcus intermedius  (68)
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Streptococcus pyogenes  (69)
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Streptococcus species  (70)
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Unidentified organism (71)
Other identification of microorganism
Item
If other identification of microorganism, please specify
text
C0205394 (UMLS CUI [1,1])
C0205396 (UMLS CUI [1,2])
C0596932 (UMLS CUI [1,3])
Item
If a pathogen(s) was recovered, was the isolate(s) sent from the local laboratory to the central laboratory?
text
C0370003 (UMLS CUI [1,1])
C1515023 (UMLS CUI [1,2])
C1880016 (UMLS CUI [1,3])
Isolate(s) sent to central laboratory
Code List
If a pathogen(s) was recovered, was the isolate(s) sent from the local laboratory to the central laboratory?
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Yes (Y)
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No (N)
Isolate(s) not sent to central laboratory, Reason
Item
If isolate(s) not sent to central laboratory, please specify reason
text
C1880016 (UMLS CUI [1,1])
C1515023 (UMLS CUI [1,2])
C1272696 (UMLS CUI [1,3])
C0566251 (UMLS CUI [1,4])
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