Note NLP

1 Formulieren

StudyEvent: ODM
1. Note NLP

Note NLP

Beschrijving

Note NLP

Alias

UMLS CUI-1: C1317574

UMLS CUI-2: C0027489

Note NLP ID

Beschrijving

A unique identifier for each term extracted from a note.

Datatype

integer

Alias

UMLS CUI [1,1]: C1317574

UMLS CUI [1,2]: C0027489

UMLS CUI [1,3]: C1300638

Note ID

Beschrijving

A foreign key to the Note table note the term was

Datatype

integer

Alias

UMLS CUI [1,1]: C1317574

UMLS CUI [1,2]: C1300638

Section concept ID

Beschrijving

A foreign key to the predefined Concept in the Standardized Vocabularies representing the section of the extracted term.

Datatype

integer

Alias

UMLS CUI [1,1]: C1828479

UMLS CUI [1,2]: C0178566

UMLS CUI [1,3]: C1300638

Snippet

Beschrijving

A small window of text surrounding the term. (Type varchar(250))

Datatype

text

Alias

UMLS CUI [1,1]: C2826302

UMLS CUI [1,2]: C1546922

Offset

Beschrijving

Character offset of the extracted term in the input note. (Type varchar(50))

Datatype

text

Alias

UMLS CUI [1,1]: C1711330

UMLS CUI [1,2]: C2826302

UMLS CUI [1,3]: C1708517

UMLS CUI [1,4]: C1317574

Lexical variant

Beschrijving

Raw text extracted from the NLP tool. (Type varchar(250))

Datatype

text

Alias

UMLS CUI [1,1]: C1527021

UMLS CUI [1,2]: C0027489

Note NLP concept ID

Beschrijving

A foreign key to the predefined Concept in the Standardized Vocabularies reflecting the normalized concept for the extracted term. Domain of the term is represented as part of the Concept table.

Datatype

integer

Alias

UMLS CUI [1,1]: C1317574

UMLS CUI [1,2]: C0027489

UMLS CUI [1,3]: C0178566

UMLS CUI [1,4]: C1300638

Note NLP source concept ID

Beschrijving

A foreign key to a Concept that refers to the code in the source vocabulary used by the NLP system

Datatype

integer

Alias

UMLS CUI [1,1]: C1317574

UMLS CUI [1,2]: C0027489

UMLS CUI [1,3]: C0449416

UMLS CUI [1,4]: C0178566

UMLS CUI [1,5]: C1300638

NLP system

Beschrijving

Name and version of the NLP system that extracted the term.Useful for data provenance. (Type varchar(250))

Datatype

text

Alias

UMLS CUI [1,1]: C0027489

UMLS CUI [1,2]: C0333052

NLP date

Beschrijving

The date of the note processing.Useful for data provenance.

Datatype

date

Alias

UMLS CUI [1,1]: C0027489

UMLS CUI [1,2]: C0011008

NLP datetime

Beschrijving

The date and time of the note processing. Useful for data provenance.

Datatype

datetime

Alias

UMLS CUI [1,1]: C0027489

UMLS CUI [1,2]: C0011008

UMLS CUI [1,3]: C0040223

Term exists

Beschrijving

A summary modifier that signifies presence or absence of the term for a given patient. Useful for quick querying. (Type varchar(1))

Datatype

text

Alias

UMLS CUI [1,1]: C2826302

UMLS CUI [1,2]: C0150312

UMLS CUI [2,1]: C2826302

UMLS CUI [2,2]: C0332197

Term temporal

Beschrijving

An optional time modifier associated with the extracted term. (for now “past” or “present” only). Standardize it later. Term_temporal is to indicate if a condition is “present” or just in the “past”. The following would be past: History = true Concept_date = anything before the time of the report (Type varchar(50))

Datatype

text

Alias

UMLS CUI [1,1]: C2826302

UMLS CUI [1,2]: C1444637

UMLS CUI [2,1]: C2826302

UMLS CUI [2,2]: C0150312

Term modifiers

Beschrijving

A compact description of all the modifiers of the specific term extracted by the NLP system. (e.g. “son has rash” ? “negated=no,subject=family, certainty=undef,conditional=false,general=false”). Term_modifiers will concatenate all modifiers for different types of entities (conditions, drugs, labs etc) into one string. Lab values will be saved as one of the modifiers. A list of allowable modifiers (e.g., signature for medications) and their possible values will be standardized later. (Type varchar(2000))

Datatype

text

Alias

UMLS CUI [1,1]: C2826302

UMLS CUI [1,2]: C3840684

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Note NLP

1 Formulieren

StudyEvent: ODM
1. Note NLP

Name

Type

Description | Question | Decode (Coded Value)

Datatype

Alias

Note NLP

Item Group

Note NLP

C1317574 (UMLS CUI-1)
C0027489 (UMLS CUI-2)

Note NLP ID

Item

Note NLP ID

integer

C1317574 (UMLS CUI [1,1])
C0027489 (UMLS CUI [1,2])
C1300638 (UMLS CUI [1,3])

Note ID

Item

Note ID

integer

C1317574 (UMLS CUI [1,1])
C1300638 (UMLS CUI [1,2])

Section concept ID

Item

Section concept ID

integer

C1828479 (UMLS CUI [1,1])
C0178566 (UMLS CUI [1,2])
C1300638 (UMLS CUI [1,3])

Snippet

Item

Snippet

text

C2826302 (UMLS CUI [1,1])
C1546922 (UMLS CUI [1,2])

Offset

Item

Offset

text

C1711330 (UMLS CUI [1,1])
C2826302 (UMLS CUI [1,2])
C1708517 (UMLS CUI [1,3])
C1317574 (UMLS CUI [1,4])

Lexical variant

Item

Lexical variant

text

C1527021 (UMLS CUI [1,1])
C0027489 (UMLS CUI [1,2])

Note NLP concept ID

Item

Note NLP concept ID

integer

C1317574 (UMLS CUI [1,1])
C0027489 (UMLS CUI [1,2])
C0178566 (UMLS CUI [1,3])
C1300638 (UMLS CUI [1,4])

Note NLP source concept ID

Item

Note NLP source concept ID

integer

C1317574 (UMLS CUI [1,1])
C0027489 (UMLS CUI [1,2])
C0449416 (UMLS CUI [1,3])
C0178566 (UMLS CUI [1,4])
C1300638 (UMLS CUI [1,5])

NLP system

Item

NLP system

text

C0027489 (UMLS CUI [1,1])
C0333052 (UMLS CUI [1,2])

NLP date

Item

NLP date

date

C0027489 (UMLS CUI [1,1])
C0011008 (UMLS CUI [1,2])

NLP datetime

Item

NLP datetime

datetime

C0027489 (UMLS CUI [1,1])
C0011008 (UMLS CUI [1,2])
C0040223 (UMLS CUI [1,3])

Term exists

Item

Term exists

text

C2826302 (UMLS CUI [1,1])
C0150312 (UMLS CUI [1,2])
C2826302 (UMLS CUI [2,1])
C0332197 (UMLS CUI [2,2])

Term temporal

Item

Term temporal

text

C2826302 (UMLS CUI [1,1])
C1444637 (UMLS CUI [1,2])
C2826302 (UMLS CUI [2,1])
C0150312 (UMLS CUI [2,2])

Term modifiers

Item

Term modifiers

text

C2826302 (UMLS CUI [1,1])
C3840684 (UMLS CUI [1,2])

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