Date of liver biopsy
Item
Date of liver biopsy
date
C0193388 (UMLS CUI [1,1])
C0011008 (UMLS CUI [1,2])
Size of liver biopsy
Item
Approximate size of liver biopsy
integer
C1299482 (UMLS CUI [1,1])
C0193388 (UMLS CUI [1,2])
Normal
Item
Normal
boolean
C0205307 (UMLS CUI [1])
Acute hepatitis
Item
Acute hepatitis
boolean
C0267797 (UMLS CUI [1])
Chronic hepatitis
Item
Chronic hepatitis
boolean
C0019189 (UMLS CUI [1])
Cholestatic hepatitis
Item
Cholestatic hepatitis
boolean
C0149904 (UMLS CUI [1])
Drug-induced cholestasis
Item
Drug-induced cholestasis
boolean
C2062350 (UMLS CUI [1])
Acute viral hepatitis
Item
Acute viral hepatitis
boolean
C0276622 (UMLS CUI [1])
Chronic viral hepatitis
Item
Chronic viral hepatitis
boolean
C0276623 (UMLS CUI [1])
Drug-induced hepatitis
Item
Drug-induced hepatitis
boolean
C1262760 (UMLS CUI [1])
Autoimmune hepatitis
Item
Autoimmune hepatitis
boolean
C0241910 (UMLS CUI [1])
Bridging necrosis
Item
Bridging necrosis
boolean
C0333511 (UMLS CUI [1])
Submassive hepatic necrosis
Item
Submassive hepatic necrosis
boolean
C0151798 (UMLS CUI [1])
Massive hepatic necrosis
Item
Massive hepatic necrosis
boolean
C0001364 (UMLS CUI [1])
Steatosis - microvesicular
Item
Steatosis - microvesicular
boolean
C1850415 (UMLS CUI [1])
Steatosis - macrovesicular
Item
Steatosis - macrovesicular
boolean
C1837256 (UMLS CUI [1])
Steatosis - mixed
Item
Steatosis - mixed
boolean
C0015695 (UMLS CUI [1,1])
C0205430 (UMLS CUI [1,2])
Non-alcoholic steatohepatitis
Item
Non-alcoholic steatohepatitis
boolean
C3241937 (UMLS CUI [1])
Alcoholic hepatitis
Item
Alcoholic hepatitis
boolean
C0019187 (UMLS CUI [1])
Hepatic granulomas
Item
Hepatic granulomas
boolean
C0745754 (UMLS CUI [1])
Sarcoidosis
Item
Sarcoidosis
boolean
C0036202 (UMLS CUI [1])
Fibrosis
Item
Fibrosis
boolean
C0239946 (UMLS CUI [1])
Cirrhosis
Item
Cirrhosis
boolean
C0023890 (UMLS CUI [1])
Primary biliary cirrhosis
Item
Primary biliary cirrhosis
boolean
C0008312 (UMLS CUI [1])
Primary sclerosing cholangitis
Item
Primary sclerosing cholangitis
boolean
C0566602 (UMLS CUI [1])
Autoimmune overlap syndrome
Item
Autoimmune overlap syndrome
boolean
C2702837 (UMLS CUI [1])
Hemochromatosis
Item
Hemochromatosis
boolean
C0018995 (UMLS CUI [1])
Alpha-1-antitrypsin deficiency
Item
Alpha-1-antitrypsin deficiency
boolean
C0221757 (UMLS CUI [1])
Wilson's disease
Item
Wilson's disease
boolean
C0019202 (UMLS CUI [1])
Veno-occlusive disease
Item
Veno-occlusive disease
boolean
C0948441 (UMLS CUI [1])
Budd-Chiari syndrome
Item
Budd-Chiari syndrome
boolean
C0856761 (UMLS CUI [1])
Neoplasia
Item
Neoplasia
boolean
C1882062 (UMLS CUI [1,1])
C0023884 (UMLS CUI [1,2])
Other final diagnosis
Item
Other final diagnosis, specify
text
C0205394 (UMLS CUI [1,1])
C0011900 (UMLS CUI [1,2])
Normal
Item
Normal
boolean
C0205307 (UMLS CUI [1])
Bridging fibrosis
Item
Bridging fibrosis
boolean
C0334160 (UMLS CUI [1])
Diffuse fibrosis
Item
Diffuse fibrosis
boolean
C0016059 (UMLS CUI [1,1])
C0205219 (UMLS CUI [1,2])
Nodular regenerative hyperplasia
Item
Nodular regenerative hyperplasia
boolean
C0020510 (UMLS CUI [1])
Congenital hepatic fibrosis
Item
Congenital hepatic fibrosis
boolean
C0009714 (UMLS CUI [1])
Cirrhosis
Item
Cirrhosis
boolean
C0023890 (UMLS CUI [1])
Centrilobular congestion
Item
Centrilobular congestion
boolean
C0267821 (UMLS CUI [1,1])
C0442080 (UMLS CUI [1,2])
Endophlebitis
Item
Endophlebitis
boolean
C0014234 (UMLS CUI [1])
Veno-occlusive disease
Item
Veno-occlusive disease
boolean
C0948441 (UMLS CUI [1])
Canalicular cholestasis
Item
Canalicular cholestasis
boolean
C3150342 (UMLS CUI [1])
Apoptosis
Item
Apoptosis
boolean
C0162638 (UMLS CUI [1])
Focal hepatocellular necrosis
Item
Focal (or spotty or mild ) hepatocellular necrosis
boolean
C0267800 (UMLS CUI [1])
lnterface hepatitis
Item
lnterface hepatitis (periportal hepatitis or piecemealnecrosis)
boolean
C0019158 (UMLS CUI [1,1])
C0333515 (UMLS CUI [1,2])
lschaemic necrosis
Item
lschaemic necrosis
boolean
C3887513 (UMLS CUI [1])
Centrolobular (Zone 3) necrosis
Item
Centrolobular (Zone 3) necrosis
boolean
C3672032 (UMLS CUI [1])
Focal coagulative necrosis
Item
Focal coagulative necrosis
boolean
C0205234 (UMLS CUI [1,1])
C1522058 (UMLS CUI [1,2])
Centrolobular (Zone 3) coagulative necrosis
Item
Centrolobular (Zone 3) coagulative necrosis
boolean
C0682619 (UMLS CUI [1,1])
C1522058 (UMLS CUI [1,2])
Bridging hepatocellular necrosis
Item
Bridging hepatocellular necrosis
boolean
C1855038 (UMLS CUI [1,1])
C0333511 (UMLS CUI [1,2])
Massive or panlobular hepatocellular necrosis
Item
Massive or panlobular hepatocellular necrosis
boolean
C0522501 (UMLS CUI [1,1])
C1855038 (UMLS CUI [1,2])
C0442131 (UMLS CUI [2,1])
C1855038 (UMLS CUI [2,2])
Dysplasia liver
Item
Dysplasia liver
boolean
C0334044 (UMLS CUI [1,1])
C0023884 (UMLS CUI [1,2])
Neoplasia liver
Item
Neoplasia liver
boolean
C1882062 (UMLS CUI [1,1])
C0023884 (UMLS CUI [1,2])
Other liver architecture
Item
If other liver architecture, please specify
text
C0205394 (UMLS CUI [1,1])
C0023884 (UMLS CUI [1,2])
C0935919 (UMLS CUI [1,3])
Normal
Item
Normal
boolean
C0205307 (UMLS CUI [1])
Ballooning
Item
Ballooning
boolean
C0333445 (UMLS CUI [1,1])
C0227525 (UMLS CUI [1,2])
Acidophilic
Item
Acidophilic
boolean
C0333931 (UMLS CUI [1,1])
C0227525 (UMLS CUI [1,2])
Pseudoxanthomatous
Item
Pseudoxanthomatous
boolean
C0227525 (UMLS CUI [1,1])
C3277905 (UMLS CUI [1,2])
Multinucleated giant hepatocytes
Item
Multinucleated giant hepatocytes
boolean
C3550474 (UMLS CUI [1,1])
C4054455 (UMLS CUI [1,2])
Other Description of Liver Cells or Hepatocytes
Item
If other Description of Liver Cells or Hepatocytes, please specify
text
C0205394 (UMLS CUI [1,1])
C0227525 (UMLS CUI [1,2])
C0678257 (UMLS CUI [1,3])
No inclusions
Item
No inclusions
boolean
C1512693 (UMLS CUI [1,1])
C1298908 (UMLS CUI [1,2])
Macrovesicular steatosis
Item
Macrovesicular steatosis
boolean
C1837256 (UMLS CUI [1])
Microvesicular steatosis
Item
Microvesicular steatosis
boolean
C1850415 (UMLS CUI [1])
Bile accumulation
Item
Bile accumulation
boolean
C3686784 (UMLS CUI [1])
Diastase-resistant, PAS-positive cytoplasmic inclusions
Item
Diastase-resistant, PAS-positive cytoplasmic inclusions
boolean
C1856311 (UMLS CUI [1,1])
C0205708 (UMLS CUI [1,2])
Alpha-1-antitrypsin inclusions
Item
Alpha-1-antitrypsin inclusions
boolean
C0002191 (UMLS CUI [1,1])
C1512693 (UMLS CUI [1,2])
C0227525 (UMLS CUI [1,3])
Megamitochondria
Item
Megamitochondria
boolean
C0544931 (UMLS CUI [1])
Mallory bodies
Item
Mallory bodies
boolean
C0333744 (UMLS CUI [1])
Ground Glass inclusions
Item
Ground Glass inclusions
boolean
C0598786 (UMLS CUI [1])
Lipofuscin pigment
Item
Lipofuscin pigment
boolean
C0023789 (UMLS CUI [1])
Hemosiderin granules
Item
Hemosiderin granules
boolean
C0019113 (UMLS CUI [1])
Orcein positive cytoplasmin granules
Item
Orcein positive cytoplasmin granules
boolean
C0069596 (UMLS CUI [1])
Protoporphyrin crystals
Item
Protoporphyrin crystals (birefringent under polarised light)
boolean
C0033733 (UMLS CUI [1])
Uroporphyrin crystals
Item
Uroporphyrin crystals (red fluorescence under ultraviolet light)
boolean
C0042093 (UMLS CUI [1])
Other Liver Cell or Hepatocyte Inclusions or Vacuoles
Item
If other Liver Cell or Hepatocyte Inclusions or Vacuoles, please specify
text
C0205394 (UMLS CUI [1,1])
C0227525 (UMLS CUI [1,2])
C0042219 (UMLS CUI [1,3])
C0205394 (UMLS CUI [2,1])
C1512693 (UMLS CUI [2,2])
None abnormality
Item
None abnormality
boolean
C0549184 (UMLS CUI [1,1])
C1704258 (UMLS CUI [1,2])
Hepatocellular mitosis
Item
Hepatocellular mitosis
boolean
C0026255 (UMLS CUI [1,1])
C2697585 (UMLS CUI [1,2])
Binucleated or multinucleated hepatocytes
Item
Binucleated or multinucleated hepatocytes
boolean
C0333909 (UMLS CUI [1])
C4054455 (UMLS CUI [2])
CMV inclusion bodies
Item
CMV inclusion bodies
boolean
C0010825 (UMLS CUI [1,1])
C0227525 (UMLS CUI [1,2])
C1512693 (UMLS CUI [1,3])
HSV inclusions
Item
HSV inclusions
boolean
C0319232 (UMLS CUI [1,1])
C0227525 (UMLS CUI [1,2])
C1512693 (UMLS CUI [1,3])
Varicella inclusions
Item
Varicella inclusions
boolean
C0740380 (UMLS CUI [1,1])
C0227525 (UMLS CUI [1,2])
C1512693 (UMLS CUI [1,3])
Other Hepatocyte or Liver Cell Nuclear Abnormalities
Item
If other Hepatocyte or Liver Cell Nuclear Abnormalities, please sepcify
text
C0205394 (UMLS CUI [1,1])
C0227525 (UMLS CUI [1,2])
C1849376 (UMLS CUI [1,3])
None Liver or Lobular Infiltrates
Item
None Liver or Lobular Infiltrates
boolean
C0549184 (UMLS CUI [1,1])
C1400896 (UMLS CUI [1,2])
Eosinophils
Item
Eosinophils
boolean
C0014467 (UMLS CUI [1,1])
C1400896 (UMLS CUI [1,2])
Lymphocytes
Item
Lymphocytes
boolean
C0024264 (UMLS CUI [1,1])
C1400896 (UMLS CUI [1,2])
Plasma cells
Item
Plasma cells
boolean
C0032112 (UMLS CUI [1,1])
C1400896 (UMLS CUI [1,2])
Neutrophils
Item
Neutrophils
boolean
C0027950 (UMLS CUI [1,1])
C1400896 (UMLS CUI [1,2])
Macrophages and proliferating Kupffer cells
Item
Macrophages and proliferating Kupffer cells
boolean
C0022801 (UMLS CUI [1,1])
C1400896 (UMLS CUI [1,2])
Granulomas
Item
Granulomas
boolean
C0745754 (UMLS CUI [1])
Other Liver or Lobular Infiltrates
Item
If Other Liver or Lobular Infiltrates, please specify
text
C0205394 (UMLS CUI [1,1])
C1400896 (UMLS CUI [1,2])
None Portal Tract Inflammation
Item
None Portal Tract Inflammation
boolean
C1298908 (UMLS CUI [1,1])
C3854488 (UMLS CUI [1,2])
Eosinophils
Item
Eosinophils
boolean
C0014467 (UMLS CUI [1,1])
C3854488 (UMLS CUI [1,2])
Lymphoid aggregates and/or follicles
Item
Lymphoid aggregates and/or follicles
boolean
C0229653 (UMLS CUI [1,1])
C3854488 (UMLS CUI [1,2])
Plasma cells
Item
Plasma cells
boolean
C0032112 (UMLS CUI [1,1])
C3854488 (UMLS CUI [1,2])
Neutrophils
Item
Neutrophils
boolean
C0027950 (UMLS CUI [1,1])
C3854488 (UMLS CUI [1,2])
Histocytes and macrophages
Item
Histocytes and macrophages
boolean
C0019612 (UMLS CUI [1])
C0024432 (UMLS CUI [2])
C3854488 (UMLS CUI [3])
Other Portal Tract Inflammation
Item
If Other Portal Tract Inflammation, please specify
text
C0205394 (UMLS CUI [1,1])
C3854488 (UMLS CUI [1,2])
Normal bile ducts
Item
Normal bile ducts
boolean
C0205307 (UMLS CUI [1,1])
C0005400 (UMLS CUI [1,2])
Proliferation of bile ducts
Item
Proliferation of bile ducts (bile ductular reaction)
boolean
C0005400 (UMLS CUI [1,1])
C0334094 (UMLS CUI [1,2])
Dilation, degeneration or disruption of portal bile ducts
Item
Dilation, degeneration or disruption of portal bile ducts
boolean
C0005400 (UMLS CUI [1])
C0011164 (UMLS CUI [2,1])
C0005400 (UMLS CUI [2,2])
C0700124 (UMLS CUI [3,1])
C0005400 (UMLS CUI [3,2])
C0332453 (UMLS CUI [4,1])
C0005400 (UMLS CUI [4,2])
Paucity of bile ducts
Item
Paucity of bile ducts
boolean
C4273160 (UMLS CUI [1])
Periductal fibrosis
Item
Periductal fibrosis
boolean
C0016059 (UMLS CUI [1,1])
C0005400 (UMLS CUI [1,2])
Other Bile Ducts
Item
If other Bile Ducts, please specify
text
C0205394 (UMLS CUI [1,1])
C0005400 (UMLS CUI [1,2])
Normal
Item
Normal
integer
C0205307 (UMLS CUI [1])
Pyelophlebitis
Item
Pyelophlebitis
boolean
C1405883 (UMLS CUI [1])
Thrombosis, sclerosis or occlusion of portal vein
Item
Thrombosis, sclerosis or occlusion of portal vein
boolean
C0155773 (UMLS CUI [1])
C0400960 (UMLS CUI [2])
C0028778 (UMLS CUI [3,1])
C0032718 (UMLS CUI [3,2])
Neoplastic Invasion of portal vein
Item
Neoplastic Invasion of portal vein
boolean
C0585133 (UMLS CUI [1])
Granulomatous compression of portal vein
Item
Granulomatous compression of portal vein
boolean
C0032718 (UMLS CUI [1,1])
C0439667 (UMLS CUI [1,2])
C0728907 (UMLS CUI [1,3])
Other Portal Veins abnormality
Item
It other Portal Veins abnormality, please specify
text
C0205394 (UMLS CUI [1,1])
C0032718 (UMLS CUI [1,2])
C0205161 (UMLS CUI [1,3])
Normal
Item
Normal
boolean
C0205307 (UMLS CUI [1])
Leishmaniasis donovani
Item
Leishmaniasis donovani
boolean
C0023273 (UMLS CUI [1])
Plasmodium falciparum
Item
Plasmodium falciparum
boolean
C0032150 (UMLS CUI [1])
Toxoplasmosis
Item
Toxoplasmosis
boolean
C0040558 (UMLS CUI [1])
Cryptococcus neoformans
Item
Cryptococcus neoformans
boolean
C0010416 (UMLS CUI [1])
Histoplasma capsulatum
Item
Histoplasma capsulatum
boolean
C0319941 (UMLS CUI [1])
Mycobacterium tuberculois
Item
Mycobacterium tuberculois
boolean
C0026926 (UMLS CUI [1])
Other mycobacterial species
Item
Other mycobacterial species
boolean
C0205394 (UMLS CUI [1,1])
C0026912 (UMLS CUI [1,2])
Other Liver Infections
Item
If Other Liver Infections, please specify
text
C0205394 (UMLS CUI [1,1])
C1112211 (UMLS CUI [1,2])
None Parasites or ova
Item
None Parasites or ova
boolean
C0549184 (UMLS CUI [1,1])
C0030498 (UMLS CUI [1,2])
C0023884 (UMLS CUI [1,3])
C0549184 (UMLS CUI [2,1])
C1267673 (UMLS CUI [2,2])
Schistosome and/or ova
Item
Schistosome and/or ova
boolean
C0036315 (UMLS CUI [1])
C1267673 (UMLS CUI [2,1])
C0036315 (UMLS CUI [2,2])
Ascaris and/or ova
Item
Ascaris and/or ova
boolean
C0003954 (UMLS CUI [1])
C3698183 (UMLS CUI [2])
Toxocara and/or ova
Item
Toxocara and/or ova
boolean
C0040550 (UMLS CUI [1])
C1267673 (UMLS CUI [2,1])
C0040550 (UMLS CUI [2,2])
Echinococcus cysts
Item
Echinococcus cysts
boolean
C0013502 (UMLS CUI [1])
Hepatic capillariasis worms and/or ova
Item
Hepatic capillariasis worms and/or ova
boolean
C0277202 (UMLS CUI [1])
C1267673 (UMLS CUI [2,1])
C0277202 (UMLS CUI [2,2])
Other Parasites or ova
Item
If Other Parasites or ova, please specify
text
C0205394 (UMLS CUI [1,1])
C0030498 (UMLS CUI [1,2])
C0023884 (UMLS CUI [1,3])
C0205394 (UMLS CUI [2,1])
C1267673 (UMLS CUI [2,2])
Haematoxylin and eosin (or H&E)
Item
Haematoxylin and eosin (or H&E)
boolean
C0523207 (UMLS CUI [1])
Masson
Item
Masson
boolean
C1294297 (UMLS CUI [1])
Toluidine blue or Giemsa
Item
Toluidine blue or Giemsa
boolean
C0523203 (UMLS CUI [1])
C0017542 (UMLS CUI [2])
Prussian blue
Item
Prussian blue
boolean
C1294004 (UMLS CUI [1])
Periodic Acidic Schiff (PAS) with or without diastase
Item
Periodic Acidic Schiff (PAS) with or without diastase
boolean
C0440048 (UMLS CUI [1])
C0002712 (UMLS CUI [2])
Oil red O
Item
Oil red O
boolean
C1294000 (UMLS CUI [1])
Congo red
Item
Congo red
boolean
C0009742 (UMLS CUI [1])
Hall's stain
Item
Hall's stain
boolean
C1720394 (UMLS CUI [1])
Gridley's stain
Item
Gridley's stain
boolean
C1293978 (UMLS CUI [1])
Rhodanine (copper)
Item
Rhodanine (copper)
boolean
C0035486 (UMLS CUI [1,1])
C0487602 (UMLS CUI [1,2])
C0009968 (UMLS CUI [1,3])
Rubeanic acid (copper)
Item
Rubeanic acid (copper)
boolean
C0073680 (UMLS CUI [1,1])
C0487602 (UMLS CUI [1,2])
C0009968 (UMLS CUI [1,3])
Orce in, aldehyde fuchsin or Victoria blue
Item
Orce in, aldehyde fuchsin or Victoria blue
boolean
C1294001 (UMLS CUI [1])
C0491984 (UMLS CUI [2])
C0078232 (UMLS CUI [3,1])
C0487602 (UMLS CUI [3,2])
Electron microscopy
Item
Electron microscopy
boolean
C0026019 (UMLS CUI [1])
Hepatitis A lmmunostains positive
Item
Hepatitis A lmmunostains positive
boolean
C0560226 (UMLS CUI [1,1])
C3687908 (UMLS CUI [1,2])
Hepatitis B core antigen or hepatitis B surface antibody immunostains positive
Item
Hepatitis B core antigen or hepatitis B surface antibody immunostains positive
boolean
C0149709 (UMLS CUI [1,1])
C3687908 (UMLS CUI [1,2])
Hepatitis D immunostains
Item
Hepatitis D immunostains
boolean
C0850990 (UMLS CUI [1,1])
C0021044 (UMLS CUI [1,2])
C3687908 (UMLS CUI [1,3])
Other immunostains
Item
Other immunostains
boolean
C0021044 (UMLS CUI [1,1])
C3687908 (UMLS CUI [1,2])
Other Histologic Staining or Additional Studies Obtained
Item
If Other Histologic Staining or Additional Studies Obtained, please specify
text
C0205394 (UMLS CUI [1,1])
C0487602 (UMLS CUI [1,2])
C0023884 (UMLS CUI [1,3])