Date of Liver Biopsy
Item
Date of Liver Biopsy
date
C0193388 (UMLS CUI [1,1])
C0011008 (UMLS CUI [1,2])
Approximate size of liver biopsy
Item
Approximate size of liver biopsy
float
C1299482 (UMLS CUI [1,1])
C0193388 (UMLS CUI [1,2])
Item
Final Diagnosis Liver Biopsy
integer
C0011900 (UMLS CUI [1,1])
C0193388 (UMLS CUI [1,2])
Code List
Final Diagnosis Liver Biopsy
Final Diagnosis Liver Biopsy
Item
Final Diagnosis Liver Biopsy, if abnormal specify
boolean
C0011900 (UMLS CUI [1,1])
C0193388 (UMLS CUI [1,2])
C0205161 (UMLS CUI [1,3])
Final Diagnosis Liver Biopsy
Item
Final Diagnosis Liver Biopsy, if Other specify
text
C0011900 (UMLS CUI [1,1])
C0193388 (UMLS CUI [1,2])
Acute hepatitis
Item
Acute hepatitis
boolean
C0267797 (UMLS CUI [1])
Chronic hepatitis
Item
Chronic hepatitis
boolean
C0524910 (UMLS CUI [1])
Cholestatic hepatitis
Item
Cholestatic hepatitis
boolean
C0149904 (UMLS CUI [1])
Drug-induced cholestasis
Item
Drug-induced cholestasis
boolean
C2062350 (UMLS CUI [1])
Acute viral hepatitis
Item
Acute viral hepatitis
boolean
C0276622 (UMLS CUI [1])
Chronic viral hepatitis
Item
Chronic viral hepatitis
boolean
C0276623 (UMLS CUI [1])
Drug-induced hepatitis
Item
Drug-induced hepatitis
boolean
C1262760 (UMLS CUI [1])
Autoimmune hepatitis
Item
Autoimmune hepatitis
boolean
C0241910 (UMLS CUI [1])
Bridging necrosis
Item
Bridging necrosis
boolean
C0333511 (UMLS CUI [1])
Submassive hepatic necrosis
Item
Submassive hepatic necrosis
boolean
C0151798 (UMLS CUI [1])
Massive hepatic necrosis
Item
Massive hepatic necrosis
boolean
C0151798 (UMLS CUI [1])
Steatosis - microvesicular
Item
Steatosis - microvesicular
boolean
C1850415 (UMLS CUI [1])
Steatosis - macrovesicular
Item
Steatosis - macrovesicular
boolean
C1837256 (UMLS CUI [1])
Steatosis - mixed
Item
Steatosis - mixed
boolean
C2711227 (UMLS CUI [1])
Non alcoholic steatohepatitis
Item
Non alcoholic steatohepatitis
boolean
C3241937 (UMLS CUI [1])
Alcoholic hepatitis
Item
Alcoholic hepatitis
boolean
C0019187 (UMLS CUI [1])
Hepatic granulomas
Item
Hepatic granulomas
boolean
C0745754 (UMLS CUI [1])
Sarcoidosis
Item
Sarcoidosis
boolean
C0036202 (UMLS CUI [1])
Fibrosis
Item
Fibrosis
boolean
C0016059 (UMLS CUI [1])
Cirrhosis
Item
Cirrhosis
boolean
C0023890 (UMLS CUI [1])
Primacy biliary cirrhosis
Item
Primacy biliary cirrhosis
boolean
C0008312 (UMLS CUI [1])
Primary sclerosing cholangitis
Item
Primary sclerosing cholangitis
boolean
C0566602 (UMLS CUI [1])
Autoimmune overlap syndrome
Item
Autoimmune overlap syndrome
boolean
C2702837 (UMLS CUI [1])
Hemochromatosis
Item
Hemochromatosis
boolean
C0018995 (UMLS CUI [1])
Alpha-1-antitcypsin deficiency
Item
Alpha-1-antitcypsin deficiency
boolean
C0221757 (UMLS CUI [1])
Wilson's disease
Item
Wilson's disease
boolean
C0019202 (UMLS CUI [1])
Veno-occlusive disease
Item
Veno-occlusive disease
boolean
C0948441 (UMLS CUI [1])
Budd-Chiari syndrome
Item
Budd-Chiari syndrome
boolean
C0155773 (UMLS CUI [1])
Neoplasia liver
Item
Neoplasia liver
boolean
C1882062 (UMLS CUI [1,1])
C0023884 (UMLS CUI [1,2])
Item
Liver Architecture
integer
C0023884 (UMLS CUI [1,1])
C0935919 (UMLS CUI [1,2])
Code List
Liver Architecture
Liver Architecture
Item
Liver Architecture, if abnormal specify
boolean
C0023884 (UMLS CUI [1,1])
C0935919 (UMLS CUI [1,2])
C0205161 (UMLS CUI [1,3])
Liver Architecture
Item
Liver Architecture, if Other specify
text
C0023884 (UMLS CUI [1,1])
C0935919 (UMLS CUI [1,2])
Bridging fibrosis
Item
Bridging fibrosis
boolean
C0016059 (UMLS CUI [1])
Diffuse fibrosis
Item
Diffuse fibrosis
boolean
C0016059 (UMLS CUI [1,1])
C0205219 (UMLS CUI [1,2])
Nodular regenerative hyperplasia
Item
Nodular regenerative hyperplasia
boolean
C0020510 (UMLS CUI [1])
Congenital hepatic fibrosis
Item
Congenital hepatic fibrosis
boolean
C0009714 (UMLS CUI [1])
Cirrhosis
Item
Cirrhosis
boolean
C0023890 (UMLS CUI [1])
Centrilobular congestion
Item
Centrilobular congestion
boolean
Endophlebitis
Item
Endophlebitis
boolean
C0014234 (UMLS CUI [1])
Veno-occlusive disease
Item
Veno-occlusive disease
boolean
C0948441 (UMLS CUI [1])
Canalicular cholestasis
Item
Canalicular cholestasis
boolean
C0008370 (UMLS CUI [1])
Apoptosis
Item
Apoptosis
boolean
C0162638 (UMLS CUI [1])
Focal hepatocellular necrosis
Item
Focal (or spotty or mild ) hepatocellular necrosis
boolean
C1855038 (UMLS CUI [1])
lnterface hepatitis
Item
lnterface hepatitis (periportal hepatitis or piecemealnecrosis)
boolean
C0019158 (UMLS CUI [1])
lschaemic necrosis
Item
lschaemic necrosis
boolean
C0027540 (UMLS CUI [1])
Centrolobular (Zone 3) necrosis
Item
Centrolobular (Zone 3) necrosis
boolean
C0027540 (UMLS CUI [1])
Focal coagulative necrosis
Item
Focal coagulative necrosis
boolean
C1522058 (UMLS CUI [1])
Centrolobular (Zone 3) coagulative necrosis
Item
Centrolobular (Zone 3) coagulative necrosis
boolean
C1522058 (UMLS CUI [1])
Bridging hepatocellular necrosis
Item
Bridging hepatocellular necrosis
boolean
C1855038 (UMLS CUI [1,1])
C0333511 (UMLS CUI [1,2])
Massive or panlobular hepatocellular necrosis
Item
Massive or panlobular hepatocellular necrosis
boolean
C1855038 (UMLS CUI [1,1])
C0442131 (UMLS CUI [1,2])
Dysplasia liver
Item
Dysplasia liver
boolean
C0334044 (UMLS CUI [1,1])
C0023884 (UMLS CUI [1,2])
Neoplasia liver
Item
Neoplasia liver
boolean
C1882062 (UMLS CUI [1,1])
C0023884 (UMLS CUI [1,2])
Item
Description of Liver Cells or Hepatocytes
integer
C0227525 (UMLS CUI [1,1])
C0678257 (UMLS CUI [1,2])
Code List
Description of Liver Cells or Hepatocytes
Description of Liver Cells or Hepatocytes
Item
Description of Liver Cells or Hepatocytes, if abnormal, specify
boolean
C0227525 (UMLS CUI [1,1])
C0205161 (UMLS CUI [1,2])
C0678257 (UMLS CUI [1,3])
Description of Liver Cells or Hepatocytes
Item
Description of Liver Cells or Hepatocytes, if Other, specify
text
C0227525 (UMLS CUI [1,1])
C0678257 (UMLS CUI [1,2])
Ballooning
Item
Ballooning
boolean
C0333445 (UMLS CUI [1,1])
C0227525 (UMLS CUI [1,2])
Acidophilic
Item
Acidophilic
boolean
C0333931 (UMLS CUI [1,1])
C0227525 (UMLS CUI [1,2])
Pseudoxanthomatous
Item
Pseudoxanthomatous
boolean
C0227525 (UMLS CUI [1,1])
C3277905 (UMLS CUI [1,2])
Multinucleated giant hepatocytes
Item
Multinucleated giant hepatocytes
boolean
C4054455 (UMLS CUI [1])
Item
Liver Cell or Hepatocyte Inclusions or Vacuoles
integer
C0227525 (UMLS CUI [1,1])
C0042219 (UMLS CUI [1,2])
C1512693 (UMLS CUI [2])
Code List
Liver Cell or Hepatocyte Inclusions or Vacuoles
Liver Cell or Hepatocyte Inclusions or Vacuoles
Item
Liver Cell or Hepatocyte Inclusions or Vacuoles, if abnormal, specify
boolean
C0227525 (UMLS CUI [1,1])
C0042219 (UMLS CUI [1,2])
C1512693 (UMLS CUI [2])
Liver Cell or Hepatocyte Inclusions or Vacuoles
Item
Liver Cell or Hepatocyte Inclusions or Vacuoles, if Other, specify
text
C0227525 (UMLS CUI [1,1])
C0042219 (UMLS CUI [1,2])
C1512693 (UMLS CUI [2])
Macrovesicular steatosis
Item
Macrovesicular steatosis
boolean
C1837256 (UMLS CUI [1])
Microvesicular steatosis
Item
Microvesicular steatosis
boolean
C1850415 (UMLS CUI [1])
Bile accumulation
Item
Bile accumulation
boolean
C3686784 (UMLS CUI [1])
Diastase-resistant, PAS-positive cytoplasmic inclusions
Item
Diastase-resistant, PAS-positive cytoplasmic inclusions
boolean
C0205708 (UMLS CUI [1])
Alpha-1-antitrypsin inclusions
Item
Alpha-1-antitrypsin inclusions
boolean
C0002191 (UMLS CUI [1,1])
C1512693 (UMLS CUI [1,2])
C0227525 (UMLS CUI [1,3])
Megamitochondria
Item
Megamitochondria
boolean
C0026237 (UMLS CUI [1])
Mallory bodies
Item
Mallory bodies
boolean
C0333744 (UMLS CUI [1])
Ground Glass inclusions
Item
Ground Glass inclusions
boolean
C0598786 (UMLS CUI [1])
Lipofuscin pigment
Item
Lipofuscin pigment
boolean
C0023789 (UMLS CUI [1])
Hemosiderin granules
Item
Hemosiderin granules
boolean
C0019113 (UMLS CUI [1])
Orcein positive cytoplasmin granules
Item
Orcein positive cytoplasmin granules
boolean
C0069596 (UMLS CUI [1])
Protoporphyrin crystals
Item
Protoporphyrin crystals (birefringent under polarised light)
boolean
C0033733 (UMLS CUI [1])
Uroporphyrin crystals
Item
Uroporphyrin crystals (red fluorescence under ultraviolet light)
boolean
C0042093 (UMLS CUI [1])
Item
Hepatocyte or Liver Cell Nuclear Abnormalities
integer
C0227525 (UMLS CUI [1,1])
C1849376 (UMLS CUI [1,2])
Code List
Hepatocyte or Liver Cell Nuclear Abnormalities
Hepatocyte or Liver Cell Nuclear Abnormalities
Item
Hepatocyte or Liver Cell Nuclear Abnormalities, if abnormal, specify
boolean
C0227525 (UMLS CUI [1,1])
C1849376 (UMLS CUI [1,2])
Hepatocyte or Liver Cell Nuclear Abnormalities
Item
Hepatocyte or Liver Cell Nuclear Abnormalities, if Other, specify
text
C0227525 (UMLS CUI [1,1])
C1849376 (UMLS CUI [1,2])
Hepatocellular mitosis
Item
Hepatocellular mitosis
boolean
C0026255 (UMLS CUI [1,1])
C2697585 (UMLS CUI [1,2])
Binucleated or multinucleated hepatocytes
Item
Binucleated or multinucleated hepatocytes
boolean
C0333909 (UMLS CUI [1,1])
C4054455 (UMLS CUI [1,2])
CMV inclusion bodies
Item
CMV inclusion bodies
boolean
C0010825 (UMLS CUI [1,1])
C0227525 (UMLS CUI [1,2])
C1512693 (UMLS CUI [1,3])
HSV inclusions
Item
HSV inclusions
boolean
C0319232 (UMLS CUI [1,1])
C0227525 (UMLS CUI [1,2])
C1512693 (UMLS CUI [1,3])
Varicella inclusions
Item
Varicella inclusions
boolean
C0740380 (UMLS CUI [1,1])
C0227525 (UMLS CUI [1,2])
C1512693 (UMLS CUI [1,3])
Liver or Lobular Infiltrates
Item
Liver or Lobular Infiltrates
boolean
C1400896 (UMLS CUI [1])
Liver or Lobular Infiltrates
Item
If Liver or Lobular Infiltrates, specify
boolean
C1400896 (UMLS CUI [1])
Liver or Lobular Infiltrates
Item
If Other Liver or Lobular Infiltrates, specify
text
C1400896 (UMLS CUI [1])
Eosinophils
Item
Eosinophils
boolean
C0014467 (UMLS CUI [1,1])
C1400896 (UMLS CUI [1,2])
Lymphocytes
Item
Lymphocytes
boolean
C0024264 (UMLS CUI [1,1])
C1400896 (UMLS CUI [1,2])
Plasma cells
Item
Plasma cells
boolean
C0032112 (UMLS CUI [1,1])
C1400896 (UMLS CUI [1,2])
Neutrophils
Item
Neutrophils
boolean
C0027950 (UMLS CUI [1,1])
C1400896 (UMLS CUI [1,2])
Macrophages and proliferating Kupffer cells
Item
Macrophages and proliferating Kupffer cells
boolean
C0022801 (UMLS CUI [1,1])
C1400896 (UMLS CUI [1,2])
Granulomas
Item
Granulomas
boolean
C0745754 (UMLS CUI [1])
Portal Tract Inflammation
Item
Portal Tract Inflammation
boolean
C3854488 (UMLS CUI [1])
Portal Tract Inflammation
Item
If Portal Tract Inflammation, specify
boolean
C3854488 (UMLS CUI [1])
Portal Tract Inflammation
Item
If Other Portal Tract Inflammation, specify
text
C3854488 (UMLS CUI [1])
Eosinophils
Item
Eosinophils
boolean
C0014467 (UMLS CUI [1,1])
C3854488 (UMLS CUI [1,2])
Lymphoid aggregates and/or follicles
Item
Lymphoid aggregates and/or follicles
boolean
C0229653 (UMLS CUI [1,1])
C3854488 (UMLS CUI [1,2])
Plasma cells
Item
Plasma cells
boolean
C0032112 (UMLS CUI [1,1])
C3854488 (UMLS CUI [1,2])
Neutrophils
Item
Neutrophils
boolean
C0027950 (UMLS CUI [1,1])
C3854488 (UMLS CUI [1,2])
Histocytes and macrophages
Item
Histocytes and macrophages
boolean
C0024432 (UMLS CUI [1,1])
C3854488 (UMLS CUI [1,2])
Item
Bile Ducts
integer
C0005400 (UMLS CUI [1])
Bile Ducts
Item
Bile Ducts, if abnormal, specify
boolean
C0005400 (UMLS CUI [1,1])
C0205161 (UMLS CUI [1,2])
Bile Ducts
Item
Bile Ducts, if Other, specify
text
C0005400 (UMLS CUI [1,1])
C0205161 (UMLS CUI [1,2])
Proliferation of bile ducts
Item
Proliferation of bile ducts (bile ductular reaction)
boolean
C0005400 (UMLS CUI [1,1])
C0334094 (UMLS CUI [1,2])
Dilation, degeneration or disruption of portal bile ducts
Item
Dilation, degeneration or disruption of portal bile ducts
boolean
C0005400 (UMLS CUI [1,1])
C0011164 (UMLS CUI [1,2])
Paucity of bile ducts
Item
Paucity of bile ducts
boolean
C4273160 (UMLS CUI [1])
Periductal fibrosis
Item
Periductal fibrosis
boolean
C0016059 (UMLS CUI [1,1])
C0005400 (UMLS CUI [1,2])
Item
Portal Veins
integer
C0032718 (UMLS CUI [1])
Portal Veins
Item
Portal Veins, if abnormal, specify
boolean
C0032718 (UMLS CUI [1,1])
C0205161 (UMLS CUI [1,2])
Portal Veins
Item
Portal Veins, if other, specify
text
C0032718 (UMLS CUI [1,1])
C0205161 (UMLS CUI [1,2])
Pyelophlebitis
Item
Pyelophlebitis
boolean
C1405883 (UMLS CUI [1])
Thrombosis, sclerosis or occlusion of portal vein
Item
Thrombosis, sclerosis or occlusion of portal vein
boolean
C0155773 (UMLS CUI [1,1])
C0400960 (UMLS CUI [1,2])
Neoplastic Invasion of portal vein
Item
Neoplastic Invasion of portal vein
boolean
C0585133 (UMLS CUI [1])
Granulomatous compression of portal vein
Item
Granulomatous compression of portal vein
boolean
C0032718 (UMLS CUI [1,1])
C0439667 (UMLS CUI [1,2])
Item
Liver Infections
integer
C1112211 (UMLS CUI [1])
Code List
Liver Infections
Liver Infections
Item
If Liver Infections, specify
boolean
C1112211 (UMLS CUI [1])
Liver Infections
Item
If Other Liver Infections, specify
text
C1112211 (UMLS CUI [1])
Leishmaniasis donovani
Item
Leishmaniasis donovani
boolean
C0023281 (UMLS CUI [1])
Plasmodium falciparum
Item
Plasmodium falciparum
boolean
C0032150 (UMLS CUI [1])
Toxoplasmosis
Item
Toxoplasmosis
boolean
C0040558 (UMLS CUI [1])
Cryptococcus neoformans
Item
Cryptococcus neoformans
boolean
C0010416 (UMLS CUI [1])
Histoplasma capsulatum
Item
Histoplasma capsulatum
boolean
C0319941 (UMLS CUI [1])
Mycobacterium tuberculois
Item
Mycobacterium tuberculois
boolean
C0026926 (UMLS CUI [1])
Other mycobacterial species
Item
Other mycobacterial species
boolean
C0026912 (UMLS CUI [1])
Parasites or ova
Item
Parasites or ova
boolean
C0030498 (UMLS CUI [1,1])
C0023884 (UMLS CUI [1,2])
C0555117 (UMLS CUI [2])
Parasites or ova
Item
If Parasites or ova, specify
boolean
C0030498 (UMLS CUI [1,1])
C0023884 (UMLS CUI [1,2])
C0555117 (UMLS CUI [2])
Parasites or ova
Item
If Other Parasites or ova, specify
text
C0030498 (UMLS CUI [1,1])
C0023884 (UMLS CUI [1,2])
C0555117 (UMLS CUI [2])
Schistosome and/or ova
Item
Schistosome and/or ova
boolean
C0036315 (UMLS CUI [1])
Ascaris and/or ova
Item
Ascaris and/or ova
boolean
C0003954 (UMLS CUI [1])
Toxocara and/or ova
Item
Toxocara and/or ova
boolean
C0040550 (UMLS CUI [1])
Echinococcus cysts
Item
Echinococcus cysts
boolean
C0013502 (UMLS CUI [1])
Hepatic capillariasis worms and/or ova
Item
Hepatic capillariasis worms and/or ova
boolean
C0277202 (UMLS CUI [1,1])
C0018889 (UMLS CUI [1,2])
Histologic Staining or Additional Studies Obtained
Item
Histologic Staining or Additional Studies Obtained
boolean
C0487602 (UMLS CUI [1,1])
C0023884 (UMLS CUI [1,2])
Histologic Staining or Additional Studies Obtained
Item
If Other Histologic Staining or Additional Studies Obtained, specify
text
C0487602 (UMLS CUI [1,1])
C0023884 (UMLS CUI [1,2])
Haematoxylin and eosin
Item
Haematoxylin and eosin
boolean
C0523207 (UMLS CUI [1])
Masson stain
Item
Masson stain
boolean
C3825641 (UMLS CUI [1])
Toluidine blue or Giemsa
Item
Toluidine blue or Giemsa
boolean
C0523203 (UMLS CUI [1])
Prussian blue
Item
Prussian blue
boolean
C0060234 (UMLS CUI [1])
Periodic Acidic Schiff (PAS)
Item
Periodic Acidic Schiff (PAS)
boolean
C0440048 (UMLS CUI [1])
Oil red
Item
Oil red
boolean
C1294000 (UMLS CUI [1])
Congo red
Item
Congo red
boolean
C0009742 (UMLS CUI [1])
Hall's stain
Item
Hall's stain
boolean
C1720394 (UMLS CUI [1])
Gridley's stain
Item
Gridley's stain
boolean
C1293978 (UMLS CUI [1])
Rhodanine (copper)
Item
Rhodanine (copper)
boolean
C0035486 (UMLS CUI [1])
Rubeanic acid (copper)
Item
Rubeanic acid (copper)
boolean
C0073680 (UMLS CUI [1])
Orce in, aldehyde fuchsin or Victoria blue
Item
Orce in, aldehyde fuchsin or Victoria blue
boolean
C0491984 (UMLS CUI [1])
Electronmicroscopy
Item
Electronmicroscopy
boolean
C0026019 (UMLS CUI [1])
Hepatitls A lmmunostains positive
Item
Hepatitls A lmmunostains positive
boolean
C0560226 (UMLS CUI [1])
Hepatitis B core antigen or hepatitis B surface antibody immunostains positive
Item
Hepatitis B core antigen or hepatitis B surface antibody immunostains positive
boolean
C0149709 (UMLS CUI [1])
Hepatitis D immunostains
Item
Hepatitis D immunostains
boolean
C0850990 (UMLS CUI [1,1])
C0021044 (UMLS CUI [1,2])
Other immunostains
Item
Other immunostains
boolean
C0021044 (UMLS CUI [1])